Frankliniella occidentalis (western flower thrips): 113209096
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Entry
113209096 CDS
T07591
Name
(RefSeq) exosome complex component RRP43
KO
K12586
exosome complex component RRP43
Organism
foc
Frankliniella occidentalis (western flower thrips)
Pathway
foc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113209096
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
foc03019
]
113209096
Messenger RNA biogenesis [BR:
foc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
113209096
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
HET-s_218-289
Motif
Other DBs
NCBI-GeneID:
113209096
NCBI-ProteinID:
XP_026282225
UniProt:
A0A6J1SSB6
LinkDB
All DBs
Position
Unknown
AA seq
272 aa
AA seq
DB search
MAAQYKTIHPVKYYRDFLAHDLRPDGRSPDKTRNVTVNVNSISTADGSSTVRIGNTTVIC
GIKAELGKPKPDEPECGFMVPNVELPPLCSPLFRPGPPSEEAQAMTCFVSQATSDMVDLK
ELCVSTDNLAWVLHIDMICLDYDGCVQDACLIALSAALRTVKLPKVEYDAETKLPSVSLD
ERADLHVKSSPVSTSFAVFDDEIILSDPTGEEENLSSAKLSVVTDGEVILSVHKPGGSAL
SETQLQDCISVAKDRANLVNELINVALSSVDR
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgcagtataagactatacaccctgttaaatattaccgtgactttttggcacac
gatctaagaccagatggtagatcaccagacaaaactagaaatgttacagttaatgtaaat
tctattagcactgctgatggatcctccacagttcgcattggaaacacaactgttatttgt
ggaatcaaggcagaattaggtaaacccaaaccagatgagcctgagtgcggatttatggta
ccaaatgttgaactgccacctttatgctctccactcttccgccctggaccaccaagtgag
gaagcacaagccatgacgtgctttgtttctcaagctacttctgacatggttgacctcaaa
gagttgtgtgtatcaactgacaacttagcatgggtgctgcacattgatatgatttgtcta
gattatgatggctgtgtacaagatgcgtgtctaatagcattatctgcagctcttcgtaca
gtaaaactgcccaaagtcgagtatgatgctgaaacaaaattgccaagtgtttctcttgat
gagagggctgatctacatgttaaatcatcaccagtttccacttcctttgcagtttttgat
gatgaaataattcttagtgaccctactggtgaggaggaaaacttatccagtgcaaaactg
agtgttgtcacagatggtgaagttattctctcagtccacaagcctggtggaagtgcatta
tcagagacacaattgcaagattgcatatctgttgccaaggatcgtgccaacttagtaaat
gaactgataaatgttgctttaagttctgtagaccggtga
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