Frankliniella occidentalis (western flower thrips): 113210325
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Entry
113210325 CDS
T07591
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
foc
Frankliniella occidentalis (western flower thrips)
Pathway
foc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
foc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113210325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
foc03019
]
113210325
Messenger RNA biogenesis [BR:
foc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113210325
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113210325
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
113210325
NCBI-ProteinID:
XP_026284061
UniProt:
A0A6J1T010
LinkDB
All DBs
Position
Unknown
AA seq
2463 aa
AA seq
DB search
MNLDSLSFALSQITYLVANLTKKNFKSSSQELSQLVGLYGVEADRHLLRCLLSHVDLSVD
GSKSNNSLLLELLGQECSALLAKPSLVSNICYAVDNPLHHQKTLKPSPLLFTQLSKVLKL
NPVQEVVFGLALTHSANPDTQNFATQFVNQKLTELIRSYIDLDSSRGHHEGGLHDSTPEV
LHLILSSVFCDPGNQFGVTSETKESFLKNLRRDFPRELVPVVLAPLLFPNKPDLPMDKLN
QDSTAMANSQQLADMIMEMGYNFTSSFEQCRNALGSLSLGGRDIPAGAVARILSMMARTH
SGLDDQVSLQSLNSSNFWGGSESGVKDKGGGVNDPSHPTTWNIEVFIQTLKELVPNIVWN
DVVTQLDHPDFIIKDRMGLNLLTSALLMGWQSQGSHHELFPVDFLYRRVWRNTEGQFSLL
QQILKNPDIFCITDYPFHSAPVDVLKAPPESDNKEIATWRCVDLVETLLLLADRGLYAQV
QELFNVPITLCPDVLVLVLLNISSPVTILRQELFKTLIPIFLSNHPNSAIILHNAWHSQM
ISIKPIIMHAMAEWYMRGDTDQTRLSRILDVAQDLKALTVLLNAQSFLFVIDLACLASRR
EYLKLEKWLADKIHDHGEPFVSACVKFLQRRCPQIMGGVIKDENMPKSAQLPHETLAVML
NCLQGCTGGLSQELTEVIMTMVANCSLLLNKPRQPPPGPVLRSHSQAHRSGLEHSLLGGQ
VFPSSQVSDPIASLSSSLVGLNLGGMPGGMGGVGGVGPPSSSAFNLPGSLGPLVSTPGSP
SRLLAPSGPTGPGPSQSPFPMLLGNQLQHVGGPVGSQVPTGAATSLVGGMGMPHLGSQQV
DKTRLGEISQMFPEMSPNVPKEIEDEANSYFQRIYNHPPHPTLSIDEVLEMLKKFKDSSS
KREKEVYYCMIRNLFEEYRFFPQYPDKELHITAQLFGGIVDRELCPNYLAMGLALRSVLE
ALRKPHGSKMYYFGIAALDRFRGKLKDYHKYCEHVSAIPHFREFPPHLIEYVEFGKNSME
PPLQPSGPVLPASLAALVAPTQTPTTTAMSAIPVATKPTPSTGGMPSRPSIANATNIDTL
LVATEKEDKITAPPEALQDKVAFVFNNLSQLNLGKKCEEIRDLVTEEYWAWIAQYLVMKR
ASIELNFHALYSNFLDTLNIPQVYTLVLRETYRNIRVLLRSDKGIANFSDRSLLKNLGHW
LGMLTLGRSGPILHIDIDIKSLLAEAYNKGQQELLYVVPFVAKVLEACAKSKVFKPPCPW
TMAIMNVLAELHQEPDLKLNLKFEIEVLCKNLNIDVADLKPSHYLKDPASVENMEYQLSQ
PKKKDQPGTTSVPSTPQTPGPHSGPSEESSHAVPTATVAPMSNSSSSSVVSHAAAVAAAN
HAAAAAAVAAATAGADLRAVSMLPPAPVPQPCTSPPPGLPAGPPEPRFSYSDINVSGITN
IGRHIVINNNVALFQANPQLKPFVRPAVERAVQEWIAPVVDRSVKIALTTSEQIVKKDFA
LDPEESRMRIAAHHMVRNLTAGMAMITCRDQLLLSIGSNLKTAFSSHMIGATQQQKDMCE
QAAQQTAQDNMEVACAFIQKTAIEKAIPEIDKHLMAEYERRKHARNEGRRYCDPVVLTYQ
AERMPEQIRLKVGGVTQQQMSVYEEFARNIPGFVPMTEREAALFVPKPFPNPLTVVPFQN
TGPAQIAYGDESSAIYDKLVSELEHNMNSILTFVPTQLANLHSLMETLMIARRSPRDALA
AMTLLQKTVESLLEGMSQLSQIINDPETMTRFRDTHLRILKGLQDQRMYGQQWTNKQVTR
CLIESRGDLRYNPDAVDCLVRSGLVNMQQYDLHLAQAMENGLNFPVVAFAMHLVQLYLVD
ERLNTNITESDLGNTIEMLARIAQHSRSPPEGLTALIELLRTTHDPNFLVDRAPGGPTAH
IHSGILQVTSRDFDDLGYVEKTDYLLREWVSLIHSPNGIREPTKAFGTFVQHLNVQGFLK
TDDVITRFFRISTRLCVDMCCQALTEQSNSPTVVRTKCYTTLDAYVKLIALLVKHSGDTA
NSGTKINLLNKVLGIVAGVLLHDQDAHTIEFQQLPYQRMFIMLFLELNAPEPILETINFQ
VLTAFCHTLHILSPSKAPGFSYAWLEIVSHRVFLGRMLALTPQQKGWGMYSQLLMDLFKF
LAPFLRNAELAKPVTLLYKGTLRLLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMRNLILS
AFPRNMRLPDPFTPNLKVDMLPEIAHAPRVLTNFSSMIQPPAFKKDLDSYLKARAPVTFL
SELRGNLQISQEPGMAYNIPLMNALVLYVGTQAINYIRSKSHTPNMTTIAHSAHMDIFQN
LAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTLLYLFAEANSEAIQEQITRVLLERLI
VNRPHPWGLLITFIELIKNPTYKFWLHEFVHCAPEIEKLFESVARSCMVQKQVQPVQENE
VQE
NT seq
7392 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactccttgtcttttgccctgtcacaaataacgtatttggtcgctaattta
accaagaagaacttcaaatcaagctctcaagagttatcacagttagtggggctgtatggc
gtggaggcggaccgacatctgctgcgctgcctgttgtctcatgttgatttgagtgtagac
ggcagcaaaagcaataacagtctcctgttggagctcctcggccaggagtgcagtgctctg
ctcgccaaaccatcgcttgtctccaatatttgttacgccgttgacaacccattacaccat
caaaagacccttaaaccatcacctctgctctttactcaactgagtaaagttctaaagctc
aatcctgttcaagaagttgtctttggtttggctcttactcattcagctaatccagacact
caaaactttgccactcaatttgtaaatcagaaacttacggaattaatcagatcctatatt
gacctcgattctagtaggggccatcacgaaggaggtttgcatgattccacacctgaagtt
ctccatttgattttaagcagtgtgttttgtgacccaggcaatcaatttggtgtaacatca
gaaactaaagaatcattcttaaaaaatcttcgcagagactttccacgtgagttggtacct
gttgtactagctccgttactcttcccaaataaacctgatttgcctatggacaaactaaat
caagacagcacagccatggcaaactctcagcaactcgccgacatgattatggagatgggc
tataacttcacctcctcatttgaacaatgtcgcaatgcattgggctcactttcacttggt
ggacgcgacatacctgcgggtgctgtggcccgtattctttccatgatggccagaactcac
agtggactcgatgatcaggtctctctacagagcctgaattcatccaatttctggggtgga
agtgagtcaggtgtcaaagataaaggtggaggggttaatgatccatcacatcccacaaca
tggaatattgaagttttcatccaaaccctgaaggaacttgttccaaatatagtttggaat
gatgttgttacccaacttgatcatcctgacttcatcatcaaggaccgtatgggcctcaac
cttctcaccagtgctctactgatgggatggcaaagccaaggatcacatcatgagctcttc
cctgttgatttcctgtatcgtagggtgtggagaaacacagaagggcaattctctttgctc
cagcaaattctcaaaaatccagatatattttgcataactgattatccattccactcagct
cctgttgatgttctaaaggcaccaccagaaagtgacaacaaagagatagcaacctggcga
tgtgttgacttggtagaaacattgttactactggctgatcgaggtctctatgctcaggtt
caggaactctttaatgtgccaattacattgtgcccagatgttctcgtattagttttactg
aacatcagctcaccagtcacaatactccgtcaagaactcttcaaaaccctcattcctatt
ttcctcagcaaccatccaaactctgctattatactgcacaatgcctggcacagccagatg
atttcaatcaaacccataataatgcatgccatggctgaatggtacatgcggggtgatact
gaccagacaagattgtcacgcattttggatgttgcccaggatctgaaggctctcactgtt
ttgctcaatgctcagtcattcctttttgtcattgacttggcctgtctagcctctagacga
gagtacttgaagcttgaaaaatggttggctgacaaaattcatgatcatggtgagcccttt
gtgtctgcttgtgtcaagtttctccagaggagatgccctcagatcatgggtggggtaatc
aaggatgaaaacatgcccaaatctgctcaactgcctcatgaaacacttgcagtcatgctg
aattgtcttcagggttgtactggtggactatctcaggagcttactgaagttattatgacg
atggtagcaaactgcagcttgcttctgaacaaacccaggcaacctccacctggtcctgtc
ctgcggtctcactctcaagcacaccgctctgggctggagcactccctactcggtggacag
gtgtttcccagttctcaagtgtctgatcccattgcgtcactcagttccagcttagttggc
cttaatttgggaggcatgcctggtggtatgggtggagtaggtggtgttggtcccccaagt
agttcagcttttaacttgccaggtagcctaggtcctcttgtctcaactccaggatctcca
tcaagattgttagctccatctgggcccacaggtcctggaccttcgcaaagcccatttcct
atgctcctcggtaatcaactacagcatgttggtgggccagttggctcacaggtacctaca
ggagcagctacatcattggttggaggcatgggaatgcctcacttggggtcccaacaagta
gacaaaactcgtcttggtgaaatttctcaaatgttccctgaaatgtcaccaaatgtaccc
aaggagattgaggatgaagccaatagttactttcaaagaatttacaaccatcctcctcat
ccaacactctctattgatgaagttttagaaatgttaaagaagtttaaggactcatcaagc
aagcgtgagaaggaagtttactattgcatgatccgtaatttatttgaagagtatcgcttt
ttccctcaatatcctgacaaggaactccatataactgctcaactgtttggtggcattgtt
gatcgtgagctttgtcctaactacttggcgatgggtttagcactcagatccgtgctagag
gctttacgcaagccgcatggaagcaagatgtattattttggcattgcagccttggatagg
ttcagaggaaaactgaaagattatcataagtattgtgaacatgtttcggcgatacctcac
ttcagagagtttccacctcatctcatagagtatgtagaatttgggaaaaattctatggaa
cctccactccaacccagcggacctgttttacctgcatctttggctgctcttgttgcacct
acacaaacaccaacaacaacagccatgtctgcgattcctgttgcaaccaaacccacaccg
tcaactggtggaatgccaagccgcccctcaattgctaatgctacaaatattgatacattg
ctggtagccactgagaaagaagacaaaatcactgcccctcctgaagcactgcaggacaaa
gttgcttttgttttcaacaatttaagtcaactgaacttaggaaagaaatgcgaagaaata
agagacttggtgactgaagaatattgggcttggattgctcaatatcttgtgatgaaacgt
gccagcatagaactgaattttcatgccctttactcaaactttcttgacactttaaatatt
ccacaggtgtacaccttggttttaagggaaacatacagaaacataagagttcttttgaga
agtgataagggcattgcaaacttttctgatcgttccttactaaagaatcttggccactgg
ttaggcatgttaacgttaggcagaagcggaccgattttgcacattgatattgatatcaaa
tctctcctggctgaggcttataataagggtcaacaagagcttctttatgttgtacctttt
gtggccaaagtcttagaggcgtgtgccaaaagcaaggtttttaaaccaccttgtccatgg
acaatggcaattatgaatgtccttgcagagctccatcaggaaccagacttaaagcttaat
ctgaagtttgaaatagaagttctttgtaaaaatcttaacattgatgtagcggatttgaaa
ccaagtcattatttgaaagatccagcaagtgtggaaaatatggaatatcagctatctcaa
ccaaagaagaaagatcagcctggtactacatctgtgccttctacacctcagactccaggt
ccgcactctggaccctctgaagaaagcagccatgctgtccccacagcaacagttgctcca
atgtcaaattcctcatcctcatcagttgtttctcatgcagcagctgtagctgctgctaac
catgctgcagctgctgcagcagttgctgctgctactgcaggggcagatcttcgggctgtt
tccatgctgcctccagctccagtgccacagccctgtacctcacctcctccaggccttcca
gctggtccacctgaaccacgattctcttactcggatatcaatgtgtctggaattacaaat
attggcagacacatcgtcattaacaacaatgttgcgttattccaagccaatcctcaactc
aagccttttgtcagacctgctgttgaacgagctgttcaagaatggattgctccagttgtt
gaccgttcagtaaagatagctcttacaacctctgagcagattgtcaagaaagactttgct
ttggacccagaagagtctcgtatgcgcattgctgctcatcacatggttcgaaacttgacc
gctggaatggccatgattacgtgcagggatcagttgttactgtcaattggatccaacttg
aagactgcttttagttctcacatgataggtgcaacacagcagcagaaagacatgtgtgaa
caagctgctcaacaaactgcccaagataatatggaagttgcatgtgcatttatccagaag
acagctatcgaaaaggcaatccctgaaattgacaagcacttaatggcagagtacgagcga
cgcaagcacgcacgtaatgagggtcgacgttattgtgaccctgttgttcttacatatcag
gctgaaagaatgccagagcaaatccgcctgaaagttggtggtgttactcagcagcagatg
agtgtttatgaagaatttgcacggaacattccaggctttgttccgatgacagaaagagaa
gctgcactgtttgtacccaaaccattccccaatccccttactgttgttcctttccagaat
acaggtcctgcgcaaatagcctatggggatgaaagcagtgccatatatgacaaactagtt
tcagaactagaacataatatgaatagcatactcacatttgttcccacgcagttagcaaac
ttgcacagtttgatggaaacattgatgattgcaaggcgctctcccagagatgcgttagct
gctatgacacttttgcaaaagacagtcgaaagtttgctggagggaatgagccagttatct
cagatcattaatgatcctgaaacaatgacgagatttagagatactcatctccgtattttg
aagggcctgcaggatcaacgcatgtatggacaacaatggacaaacaagcaagtcactcgg
tgccttattgaatcaagaggagatctccgatacaatccagatgctgttgattgtctagtg
cgctctggcttggtcaacatgcaacagtatgatctgcaccttgcccaagccatggagaat
ggtcttaatttccctgtggttgcatttgctatgcaccttgtccagctgtacctagttgat
gaacgtctcaacaccaacatcactgagagtgatctagggaacaccattgaaatgttagcg
cggatcgcacaacattctcgctcaccacctgaaggccttactgcacttattgagctactt
cgcacaactcatgatcccaatttccttgtggatagagcaccggggggaccaactgctcac
atccattctggtatactgcaagtgacatctcgcgactttgatgatttgggatacgttgaa
aagactgactacctgctgagggagtgggtctcactcattcactctcctaatggaatcaga
gagcccacaaaagcatttggtacttttgttcagcatttgaatgtgcaaggtttcttgaag
acagatgatgtgattacaagatttttccgcatcagcactcgactatgtgttgacatgtgc
tgtcaagcgctcactgagcaatccaactctcctactgtagtacgtacaaagtgctatacc
actctggatgcgtatgtaaaacttatagctctgcttgtgaaacactcaggtgatactgcc
aattcaggcacaaaaattaaccttctgaacaaggtcttgggaattgttgctggtgtgcta
ttacatgatcaagatgctcacactatagagttccagcaactaccctatcaacgcatgttt
atcatgctatttttagagctgaatgctcctgaaccaattttggaaactattaacttccaa
gtgctgactgctttttgtcacacactccatatcctatctccatccaaagctccaggcttt
tcttatgcatggctggagattgtctcacatcgagtatttttgggtagaatgcttgctctt
actcctcagcaaaagggatggggaatgtattctcaattgctgatggacctcttcaaattt
ttggctccattcctgaggaatgctgaacttgccaaaccagtaaccttgctgtacaaaggc
acattaagactgctacttgtactgcttcatgacttcccagaatttctgtgtgattatcat
tatgggttctgcgatgtaattcctcctaattgcattcagatgcgcaatttgattttgtca
gccttcccaaggaacatgcgtcttccagatccattcaccccaaatttaaaagttgacatg
ttgccagaaatagctcatgctcctcgtgtcttgactaacttctcttctatgatccaacca
ccagctttcaaaaaggatcttgattcatatctgaaagcacgtgctcctgttaccttcctg
tctgagcttcgtggaaacctacaaatctctcaggaacctggaatggcatacaatattcct
ctcatgaatgctttggttctctatgtgggcactcaagctataaattacatccgaagcaaa
agccataccccaaatatgacaacaattgctcattcggctcacatggacatcttccaaaat
ctagcagttgatctggatactgaaggtcgatacctattccttaacgccatagctaatcag
ctgcgctaccccaacagtcatactcactatttcagttgtaccctactgtacttatttgca
gaggctaactcagaagcaattcaggaacaaataacaagagtccttctggagcgtttaatt
gtaaaccgcccacatccttggggtcttcttatcacctttattgagctgatcaaaaaccca
acctacaaattctggcttcatgaatttgtccactgtgccccagaaattgagaagcttttt
gagtctgtggctcgatcatgcatggtgcagaaacaagttcaacctgttcaggagaacgaa
gttcaagagtaa
DBGET
integrated database retrieval system
