Faecalibacterium prausnitzii SL3/3: FPR_29690
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Entry
FPR_29690 CDS
T02592
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
fpa
Faecalibacterium prausnitzii SL3/3
Pathway
fpa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fpa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FPR_29690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fpa03021
]
FPR_29690
03400 DNA repair and recombination proteins [BR:
fpa03400
]
FPR_29690
Enzymes [BR:
fpa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FPR_29690
Transcription machinery [BR:
fpa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FPR_29690
DNA repair and recombination proteins [BR:
fpa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FPR_29690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DCTN5
Motif
Other DBs
NCBI-ProteinID:
CBL03054
UniProt:
D4K645
LinkDB
All DBs
Position
3001119..3004982
Genome browser
AA seq
1287 aa
AA seq
DB search
MMKVKPVKLGKTERMSFSHIDEVISMPNLIEVQKNSYQWFLDEGLKEVFHDIGTIEDYTG
NLALSFVDFRLDKEPKYSIKECKERDVTFAAPLRVTARLLNKETGEVKDQEIFMGDFPLM
TDAGTFVINGAERAIVSQLVRSPGVFYGHAKDKVGNDLYSATMNPNRGAWLEYETDAANV
FYVRIDKNRKLPVTVLCRALGLSSNEDILNYFGEDERILATLEKDTTKNREEGLLEVYRK
LRPGEPPTVESATSQIDMLFFDPRRYDLSRFGRYKMNKKLSLARRIMDHVAAENVVDPFT
GEILVEADKKIDRKLAEQIDAAGVNLVVLKIDDPMKDQPHKVKVITNGCVDAQAIIDSYY
PAFKGVDVKECGINERCCLKELRKILDNASSAEEVMESLKKDHDLLIGRTVTIDDILSSI
NYLNGLGYGIGTTDDIDHLGNRRIRSVGELLQNQFRIGFSRMERVIRERMTLQSQDQSVI
TPQALINIRPVVAAIKEFFGSSPLSQFMDQNNPLAELTHKRRLSALGPGGLSRDRAGFEV
RDVHYSHYGRMCPIETPEGPNIGLISYLASYAKINEYGFVEAPYRKVKKIYDENNNLIEQ
VVTDEVEYMTADVEDEYVVAQANEPLDEGKHFIRPRVSARRRDEILEIDAEKVDYMDVSP
RMMVSVATACIPFLENDDCNRALMGSNMQRQAVPLMVTQQPIVATGMEYKAATDSGTAVL
AKSNGVVEKVDADHVVVRNEQGALEDYSLIKFARSNAGTCINQRPIVEVGETVTAGQVLA
DGPAMRNGEISLGKNALIGFMTWEGYNYEDAVLLNEKIVREDVYTSIHIEEYETESRDTK
LGPEEITRDIPNVSEDALKDLDERGIIRIGAEVKSGDILVGKVTPKGETELTAEERLLRA
IFGEKAREVRDTSLRVPHGAYGIIVDVKVFTPENSDELQPGVREVVRCYIAQKRKISVGD
KMAGRHGNKGVVSRILPQEDMPYLPDGTPLDIVLNPLGVPSRMNIGQVLEVNLGYAAKAC
GIKVMTPVFDSARENDIGDTFDTAREMWHGENAPAYPTKLPKIMGEKGHIIDFSKIELDR
DGKTTVYDGRTGEKFDNRVTVGYMYYLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFG
GQRFGEMEVWALEAYGAAYTLQEILTVKSDDVEGRVKTYEAIVKGEPIPQPGIPESFRVM
LKELQSLGMDVIVQDKDGNEIDMRQNFDDEETGFDMRDVAGTETVVQESELTDYNIKDAD
AGFDDPSVLEDDNSGAEAPAASDEVDF
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaagtcaagcccgtaaagctcggcaaaaccgagcgcatgagcttctcccacatc
gacgaagtcatcagtatgccgaacctgatcgaggtgcagaagaactcgtatcagtggttc
ctggatgaaggcctgaaggaggtcttccacgatatcggcaccattgaggactacaccggc
aatctggcactgagctttgtggacttccggctggataaggagccgaagtacagcatcaag
gagtgcaaggagcgcgacgttacctttgcagcccccctgcgcgtcactgcccgtctgctg
aacaaggagaccggcgaggtgaaggatcaggagatcttcatgggtgacttccccctgatg
accgacgcaggcacctttgtcatcaacggtgccgagcgtgcaatcgtcagccagctggtc
cgctctcccggtgtgttctacggccatgcgaaggataaggtcggtaacgacctgtacagc
gccaccatgaaccccaaccgcggtgcatggctggagtacgagaccgatgccgccaacgtg
ttctatgtccgtatcgataagaaccgtaagctgcccgtcaccgtgctgtgccgtgcactg
ggcctgtcctctaacgaggatatcctgaactacttcggcgaggacgagcgcattctggcc
acgctggaaaaggataccaccaagaaccgcgaggagggcctgctggaggtctaccgcaag
ctgcgccccggcgagccccccacggtggagtccgctaccagccagatcgatatgctgttc
ttcgatccgcgccggtacgacctgtcccgcttcggccgctataagatgaataagaagctg
tctctggcacgccgcatcatggaccatgtggccgcagagaacgtggtggatcccttcacc
ggcgagatccttgtcgaggccgacaagaagatcgaccgcaagctggctgagcagatcgat
gctgccggcgtgaatctggtcgtgctgaagatcgatgatcccatgaaggatcagccccac
aaggtcaaggtcatcaccaacggctgcgtggacgcacaggccatcatcgacagctactac
cccgcattcaagggtgtggatgtcaaggagtgcggcatcaacgagcgctgctgcctcaag
gagctgcgcaagatccttgataacgcctccagcgccgaggaggtcatggagagcctgaag
aaggatcacgacctgctcattggccgtaccgtcaccatcgacgatatcctgtcctctatc
aactacctgaacggtctgggctacggcatcggcaccaccgatgatatcgaccatctgggc
aaccgccgtatccgcagcgtgggcgagctgctgcagaaccagttccgcatcggtttctcc
cgtatggagcgcgtcatccgtgagcgtatgaccctgcagagtcaggatcagagcgtcatc
actccgcaggcactgatcaacatccgtcctgtggtggcagccatcaaggagttcttcggc
tcctctccgctgtctcagttcatggatcagaataaccctctggctgagctgacccacaag
cgccgtctgtctgctctgggccccggcggtctgagccgtgaccgcgcaggcttcgaagtc
cgcgacgttcattacagtcactatggccgtatgtgccccattgagacccctgaaggcccc
aacatcggtctgatctcctatctggcatcctacgccaagatcaacgagtacggcttcgtg
gaggctccctaccgcaaggtcaagaagatctacgacgagaacaacaatctcatcgagcag
gtcgtcaccgacgaggtggagtatatgaccgccgatgtggaggacgagtacgttgtggca
caggccaacgagccgctggatgaaggcaagcacttcatccgtccccgtgtgtctgcccgc
cgccgcgacgagatcttggaaatcgacgcagagaaggtcgattacatggacgtttctccg
cgaatgatggtctctgttgctaccgcctgcatccccttcctggagaacgatgactgtaac
cgtgcactgatgggctctaacatgcagcgtcaggcagtgcctctgatggtcacccagcag
cccattgttgctaccggtatggagtacaaggctgctaccgattccggcactgctgtgctg
gccaagagcaacggcgttgtggaaaaggtcgatgccgaccatgttgtggtgcgcaacgag
cagggcgctctggaggattattctctgatcaagtttgcccgctccaacgcaggcacctgc
atcaaccagcgccccatcgtagaagtgggcgagaccgtcaccgccggtcaggtgctggcc
gatggccccgcaatgcgcaacggcgagatctctctgggtaagaacgccctgatcggcttc
atgacctgggagggctacaactacgaggacgccgtcctgctgaacgagaagatcgtgcgt
gaggacgtgtacacctccatccacatcgaggagtacgagaccgagagccgcgataccaag
ctgggacccgaagagatcacccgcgacatccccaacgtttctgaggacgccctgaaagat
ctggacgagcgcggcatcatccgcatcggtgccgaggtcaagagcggcgatattctggtc
ggtaaggtcaccccgaagggtgagaccgagctgactgctgaggagcgcctgctgcgtgcc
atcttcggtgagaaagcccgcgaggtgcgcgatacctctctgcgtgtgccccacggcgca
tacggcatcattgtggatgtcaaggtctttaccccggagaacagcgatgagctgcagccc
ggtgtgcgcgaggtcgtccgctgctatatcgctcagaagcgtaagatcagcgtcggcgat
aagatggcaggccgtcacggtaacaagggtgtcgtttcccgcatcctgccgcaggaggat
atgccctacctgcccgacggcactccgctggacatcgtgctgaacccgctgggcgtgcct
tcccgtatgaatatcggtcaggtgctggaagtcaacctcggctacgctgccaaggcctgc
ggcatcaaggtcatgacccctgtctttgactctgcccgtgagaacgacatcggcgatact
tttgataccgcccgcgagatgtggcacggcgagaatgctcccgcatatcccaccaagctg
cccaagatcatgggcgagaagggccacatcatcgacttctccaagatcgagctggatcgt
gacggcaagaccaccgtttacgatggccgtaccggtgaaaagtttgataaccgcgttacc
gttggttatatgtactacctcaagctgcatcacctggtcgacgataagatccacgcccgt
tccaccggcccctactctctggtcactcagcagcctctgggcggcaaggctcagttcggc
ggtcagcgcttcggcgagatggaggtctgggcactggaagcttacggcgccgcttacacc
ctgcaggagatcctgactgtcaagtccgatgatgtggagggtcgtgtcaagacctacgaa
gccatcgtcaagggcgagcccatcccgcagcccggcatccccgagtccttccgcgttatg
ctgaaggaactgcagtctctgggtatggacgtgatcgtgcaggataaggacggcaacgag
atcgatatgcgccagaacttcgacgatgaagagaccggctttgatatgcgtgacgttgcc
ggtaccgagactgtggtgcaggagagcgaactgactgattacaacatcaaggacgccgat
gcaggtttcgatgatccttctgtgctggaggacgataactccggtgccgaggctccggct
gcttctgacgaagtagatttctga
DBGET
integrated database retrieval system
