Flavobacterium pallidum: HYN49_06670
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Entry
HYN49_06670 CDS
T06077
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
fpal
Flavobacterium pallidum
Pathway
fpal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fpal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HYN49_06670 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fpal03021
]
HYN49_06670 (rpoB)
03400 DNA repair and recombination proteins [BR:
fpal03400
]
HYN49_06670 (rpoB)
Enzymes [BR:
fpal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HYN49_06670 (rpoB)
Transcription machinery [BR:
fpal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HYN49_06670 (rpoB)
DNA repair and recombination proteins [BR:
fpal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HYN49_06670 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
AGA2
Motif
Other DBs
NCBI-ProteinID:
AWI25605
UniProt:
A0A2S1SGU8
LinkDB
All DBs
Position
complement(1667385..1671197)
Genome browser
AA seq
1270 aa
AA seq
DB search
MITNQTERLNFASTKNIPDYPDFLDIQVKSFKDFFQLETKSDERGNEGLYNTFMENFPIT
DTRNQFVLEFLDYFVDPPRYTIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIVQDVY
LGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEF
ATDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEIKVSKTGLKKYIGRKL
AARVLNTWHEDFVDEDTGEVVSIERNEIILDRDTIIDKDNVEEIIDANVKSILLHKEDAN
QADYAIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEV
GRYRMNKKLNLDIPMEKQVLTKEDIITIVKYLIELINSKAEIDDIDHLSNRRVRTVGEQL
SAQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLGVYAK
VNGMGFIETPYRKVTDGKIDITSDPVYLSAEEEEGKLISQANIEVGADGTILADKVIARE
EGDFPVVDPHSIHYADVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLRPEAP
IVGTGLERQVASDSRVLINAEGHGTVEYVDANIITIKYDRTEEERMVSFDADEKTYNLIK
FRKTNQSTSINLKPIVRKGDRVIPGQVLSEGYATQNGELALGRNLKVAFMPWKGYNFEDA
IVISEKVVRDDIFTSIHIDDYSLDVRDTKLGNEELTNDIPNVSEEATKDLDENGMIRIGA
EVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLHGVVLDKKLFA
RAVKDKRKRTKDKDDLGSLEMEFETKFVELKDKLVDKLFLIVNGKTSQGVMNDLGEEVLP
KGKKYTQKMLNAVEDFAHLSKGQWVADEETNKMVNDLIHNYKIKLNDLQGALRREKFTIT
VGDELPAGILKLAKVYIAKKRKLKVGDKMAGRHGNKGIVARIVRHEDMPFLEDGTPVDIV
LNPLGVPSRMNIGQIYETVLGWAGMNLGKKFATPIFDGATLDQINELTDEAGIPRFGHTY
LYDGGTGERFHQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWALEAYGASSTLREILTVKSDDVIGRAKTYESIVKGESMPEPGLPESFNVLMHELK
GLGLDIRLEE
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgataacaaatcagactgaaagattgaattttgcctcgaccaaaaatatcccggactat
ccggatttcttagatattcaggtcaaatcttttaaagatttcttccaactggaaaccaaa
tctgacgagaggggcaacgaagggctttataacaccttcatggagaactttccaatcact
gacaccagaaaccaattcgtactggagttccttgattattttgttgatccgccacgttat
accattcaggaatgtattgagagaggacttacttacagtgtgcctttaaaagccaggtta
aaactgtattgtacagatcccgagcatgaggattttgaaactattgtacaggatgtgtac
ctcggtactattccttatatgacgccaagcggtacgtttgtcatcaatggcgccgagcgt
gtagtagtgtcgcagttgcaccgttcacctggtgtcttcttcggacagtcgttccacgcc
aacggaaccaaattatattctgcccgtgtcatcccattcaaaggatcatggattgaattc
gcaaccgatatcaacagcgtcatgtacgcgtatatcgaccgtaagaaaaaattaccggta
accactttattccgtgctatcggttttgaaagagataaggatatccttgaaatcttcgac
cttgctgaggaaatcaaagtatctaaaacaggacttaagaaatacatcggacgcaaatta
gcagcccgtgtattgaatacatggcacgaagatttcgtggacgaggataccggcgaggta
gtttctatcgaacgtaacgagattatccttgatcgtgataccatcatcgacaaagataat
gtggaggaaatcatcgacgccaatgtaaaatcgatccttttgcacaaggaagatgcgaat
caggctgattatgccatcatccacaacacactgcaaaaagacccgaccaactctgaaaaa
gaagccgtcgagcacatctaccgtcagctgcgtaatgcagaaccacctgatgaggagact
gcacgtggtatcatcgataaattgttcttctctgaccaacgttataacttaggtgaagta
ggtcgttacaggatgaacaaaaaactgaaccttgatatcccaatggaaaagcaggtcttg
accaaagaagatatcatcactatcgtgaaatacttaatcgaattgatcaactctaaagca
gagattgatgatatcgatcacttgtcaaaccgtcgtgtacgtactgttggtgaacaactt
tcagcacaattcggcgttggacttgcccgtatggcacgtacgatccgtgaaaggatgaac
gttcgtgacaatgaagtatttacgccgatcgatttgatcaatgcgaaaactttgtcgtct
gtaatcaattctttcttcggaacaaaccagttgtctcagttcatggatcaaacgaatcca
ttggccgagattactcacaagagaagattgtctgcccttggacctggtggtctttcccgt
gaaagagccggtttcgaggtacgtgacgttcactatacacactacggccgtttatgcccg
attgaaacaccggaaggaccaaacatcggtttgatctcttcacttggggtttatgcgaaa
gtaaacggaatgggattcatcgaaacgccttaccgtaaagtaactgatggtaaaattgac
attacttccgatcctgtttatttaagtgcagaagaagaagaaggcaaattgatttcccag
gccaacattgaagtgggtgctgacggaaccatccttgctgataaagtaattgcccgtgag
gaaggtgacttccctgtggtggatccacacagcattcattatgctgacgttgcgccaaac
cagatcgcgtcgatttccgcttcattgattccgtttttggagcatgatgatgcgaaccgt
gcgttgatgggatcaaacatgatgcgccaggccgtaccattgttacgtcctgaagctcca
atcgttggtacaggtcttgaaagacaggtggcttctgattcccgtgtgttgatcaatgct
gaaggtcatggaacggtagaatatgttgatgcaaacatcatcactattaaatatgaccgt
acggaagaagaaagaatggtaagttttgatgctgatgagaagacttataatctgatcaaa
ttcagaaagaccaaccaaagtacttcgattaacctgaagcctatcgtaagaaaaggcgac
cgtgttattcctggtcaggtgctgtctgaaggttacgctacccaaaacggagagcttgca
cttggaagaaaccttaaagtggcgtttatgccatggaaaggatacaacttcgaggatgcg
atcgtaatctctgagaaagtagttcgcgatgatatctttacttcaatccacatcgatgat
tattcattggacgtacgtgatacgaaactgggtaatgaagaattaaccaacgacatcccg
aacgtttctgaagaggctaccaaagaccttgacgaaaacggtatgatccgtatcggtgct
gaagtgaagcctggtgacatccttatcggaaagattacgcctaaaggagaatcagatcct
actccggaagaaaaactgcttcgcgcgatcttcggtgataaggccggtgatgtgaaagat
gcgtcattgaaagcttctccatctctgcatggagttgtattagacaaaaaactgttcgca
agagcggtaaaagataaaagaaaacgtaccaaagacaaggatgatttgggctcccttgaa
atggagttcgaaaccaaatttgtggaattgaaagacaaactggttgacaaattattcctg
attgtcaatgggaaaacctctcagggtgtcatgaatgatctgggtgaagaagtattgcca
aaaggtaagaaatacactcagaaaatgctgaacgctgtagaagatttcgctcacttaagt
aaaggacaatgggttgcagatgaggaaaccaataaaatggtaaacgacctgatccacaac
tacaaaatcaaactgaatgaccttcagggtgctttgagaagagagaaattcacgattacc
gtaggtgatgaattgcctgcaggaatcctgaaactggctaaagtatacatcgctaagaaa
cgtaaactgaaagtaggtgataaaatggcgggacgtcacggtaacaaaggtattgttgcg
cgtatcgttcgtcacgaagacatgccattccttgaagacggaacgcctgtagacatcgta
ttgaacccgctgggtgtaccttcgcgtatgaacatcggacagatttacgaaactgtactt
ggatgggccggtatgaaccttggcaagaaatttgcaacgccgattttcgacggagcaaca
cttgaccagatcaacgaactgacagacgaagccggaattccacgtttcggacacacgtac
ctgtatgacggaggaaccggagagcgtttccaccagcctgcaaccgtaggtgtgatctat
atgctgaaactggggcacatggttgatgataagatgcacgcacgttctatcggaccgtac
tctcttattacgcagcagcctcttggaggtaaggcacagttcggtggacagcgtttcgga
gagatggaggtttgggcactcgaggcttatggtgcgtccagcacacttcgtgaaatcctc
accgtgaaatcggatgacgtgatcggaagggcgaaaacttacgagtcgatcgttaagggt
gaatccatgccggaaccgggacttcctgagtcatttaacgtattgatgcacgagcttaaa
ggtcttggattagacattcgtttagaagaataa
DBGET
integrated database retrieval system
