Fusobacterium pseudoperiodonticum: CTM68_04355
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Entry
CTM68_04355 CDS
T05232
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
fpd
Fusobacterium pseudoperiodonticum
Pathway
fpd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fpd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CTM68_04355 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fpd03021
]
CTM68_04355 (rpoB)
03400 DNA repair and recombination proteins [BR:
fpd03400
]
CTM68_04355 (rpoB)
Enzymes [BR:
fpd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CTM68_04355 (rpoB)
Transcription machinery [BR:
fpd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CTM68_04355 (rpoB)
DNA repair and recombination proteins [BR:
fpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CTM68_04355 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Myosin_VII_N
Motif
Other DBs
NCBI-ProteinID:
ATV56995
LinkDB
All DBs
Position
complement(853271..856831)
Genome browser
AA seq
1186 aa
AA seq
DB search
MQKLIERLDFGKIKARGSMPHFLEFQLNSYEDFLQTNMSPNKREDKGFELAFKEVFPIES
SNGDVRLEYIGYELHEAEAPLNDELECKRRGKTYSNSLKVRLRLINKKMGNEIQESLVYF
GEVPKMTERATFIINGAERVVVSQLHRSPGVSFSKEVNTQTGKDLFSGKIIPYKGTWLEF
ETDKNDFLSVKIDRKKKVLATVFLKAVDFFKDNKEIIEHFLEAKELNLKSLYKKYAKEPE
ELLNVLKQELEGSLVKEDILDEETGEFIAETEAIITEELINILIENKIETISYWFVGPED
KLLANTLANDETLTEEQAVVEVFKKLRPGDQVTIDSARSLIRQMFFNPQRYDLEPVGRYK
MNKRLKLDVAEDQISLTKEDVLGTMKYVTDLYNGDQNVHTDDIDNLSNRRIRGVGELLLM
QIKTGLAKMNKMVKEKMTTQDIETVSPQSLLNTRPLNALIQDFFGSGQLSQFMDQSNPLA
ELTHKRRISALGPGGLSRERAGFEVRDVHDSHYGRICPIETPEGPNIGLIGSLATYAKIN
KYGFIETPYVKVENGVALVDDVRYLAADEEDGLFIAQADTKLGKGNKLQGLVVCRYGHEI
VEIEPERVNYMDVSPKQVVSVSAGLIPFLEHDDANRALMGSNMQRQAVPLLRPEAPFIGT
GLERKVAVDSGAVVTTKVAGKVIYVDGKKIVIEDADKKEHTYKLLNYERSNQSMCLHQTP
LVDLGDVVKAGDIIADGPATKSGDLALGRNILMGFMPWEGYNYEDAILISDRLRKEDVFT
SIHIEEYEIDARATKLGDEEITREIPNVSESALRNLDENGIIMIGSEVGPGDILVGKTAP
KGETEPPAEEKLLRAIFGEKARDVRDTSLTMPHGSKGVVVDILELSRENGDELKAGVNKS
IRVLVAEKRKITVGDKMSGRHGNKGVVSRVLPAEDMPFLEDGTHLDVVLNPLGVPSRMNI
GQVLEVHLGMAMRTLNGGTCIATPVFDGATEEQVKDYLEKQGFPRTGKVTLYDGRTGEKF
DNKVTVGIMYMLKLHHLVEDKMHARAIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAY
GASNILQEMLTVKSDDITGRTKTYEAIIKGEAMPESDLPESFKVLLKEFQALALDIELCD
EEDNVINVDEEVEVEETPTEYSPQYEIDTFGLHEIDEDAEDVEDLE
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaaaactcattgaaagacttgattttggaaaaataaaagctagaggatcaatgcct
cattttcttgaattccaattaaattcttatgaagattttttacaaacaaatatgtcccca
aataaaagggaagataagggatttgaattggcatttaaagaagtgttcccaatagaatct
tcaaatggagatgtaaggctagaatacataggatatgagttacatgaagcagaagctcca
ttgaatgacgagctagaatgcaaaagaagaggaaaaacatattctaattcattgaaagtt
agattgagactaatcaacaaaaaaatgggaaatgagattcaagaatctttagtttacttt
ggagaagttcctaaaatgacagaaagagctacatttattataaatggagcagaaagagtt
gttgtatcacaattacatagatcaccaggagtttcttttagtaaggaagtaaatactcaa
acaggtaaggatttattttcaggaaaaataattccatacaaagggacttggttagaattc
gaaacggataaaaatgactttttaagtgtaaaaatagatagaaagaaaaaagttttagca
actgtattcttaaaagcagtagatttctttaaagataataaagaaatcatagaacatttc
ttagaagctaaagaattaaacttaaagtcattatataagaaatatgcgaaagaacctgaa
gaactattaaatgttttaaaacaagaattagaaggttcattagttaaagaggatatttta
gatgaagaaacaggagaatttatagcagaaacagaagctataataactgaagaacttatc
aatattttaatagaaaacaaaatagaaactatttcttattggtttgttggacctgaagat
aaattgcttgctaatactttagcaaatgatgaaactttaacagaagaacaagcagttgtt
gaagtattcaaaaaattaagaccaggagatcaagtaactattgattcagctagaagttta
atcagacaaatgttctttaacccacaaagatacgacttagaacctgtgggaagatacaag
atgaacaaaagattaaaacttgatgtagcagaggatcaaatttcattaactaaagaagat
gttttaggaacaatgaaatatgttactgacctttataatggtgaccaaaatgttcataca
gacgatatagataacttatctaatagacgtattagaggggttggagaattacttcttatg
caaatcaaaacaggacttgctaagatgaataaaatggttaaggaaaaaatgactactcaa
gatatagaaacagttagtcctcaatcattattaaatactagacctttaaatgctctaata
caagatttctttggttctggacaattatcacaattcatggaccaatcaaatccgctagct
gaattaactcataagagaagaatatcagcactaggacctggaggactttcaagagaaaga
gcagggttcgaagtaagagacgttcacgattctcactatggaagaatctgtcctatagaa
acaccagaaggaccaaacattggacttatcggatctcttgcaacttatgcaaagattaat
aaatatggattcatagaaactccatatgtaaaagtagaaaatggagtagctttagttgat
gatgttcgttaccttgcagctgacgaagaagatggattatttatagctcaagccgacaca
aaattaggtaaaggtaataaattacaaggtttagtagtttgtagatatggacatgaaatt
gttgaaatagaacctgaaagagtaaactatatggacgtttctcctaaacaagtggtatct
gtatcagcaggtttaataccattcttagaacacgatgacgccaacagagcactgatggga
tctaacatgcaaagacaagcagttcctctattaagaccagaagctccttttataggaaca
gggcttgaaagaaaagttgctgttgattctggtgcagtagttacaacaaaagtagcagga
aaagttatttatgttgatggtaaaaagatagtaattgaagatgcagataaaaaagaacat
acatataaacttctaaattatgaaagatctaaccaatcaatgtgtttacatcaaacacct
ttagttgatttaggtgatgttgtaaaagcaggagatatcattgctgatggacctgcaact
aagtcaggagacttagctctaggtagaaatattcttatgggatttatgccttgggaagga
tataactatgaagatgcgatcctaatctctgatagacttagaaaagaagatgtatttact
tctatacatatagaagaatatgaaatagatgcaagagctacaaaattaggtgatgaagaa
ataacaagagaaatccctaatgtgtcagaaagtgcattaagaaacttagatgaaaatgga
ataatcatgataggttcagaagttggacctggagatatattagttggaaaaacagctcct
aaaggagaaactgaaccacctgctgaagaaaaacttttaagagctatatttggagaaaaa
gcaagagatgtaagagatacatcacttactatgcctcatggttctaaaggagttgtcgtt
gatattcttgaactttcaagagaaaatggagatgaactaaaagcaggagtaaacaaatct
attagagttttagttgctgaaaaacgtaagataactgtaggggataaaatgtcaggaaga
catggaaacaaaggggttgtttcaagagtattacctgcagaagacatgccattcttagaa
gatggaacacacttagacgttgtattaaaccctctaggagtaccatctcgtatgaacata
ggacaagtactagaagtacacttaggtatggcaatgagaactttaaatggaggaacttgt
atagctacaccagtattcgatggagcaacagaagaacaagttaaagattaccttgaaaaa
caaggattcccaagaacaggaaaagtaacattatacgatggaagaactggagaaaagttt
gataacaaagttacagttggaataatgtatatgttaaaattacaccatcttgttgaagac
aaaatgcatgcgagagcaataggaccttattcgttagtaacacaacaacctcttggaggt
aaggcacaattcggtggacaaagacttggggaaatggaagtttgggctttagaagcatat
ggagcatcaaatatacttcaagaaatgttaacagttaaatcagatgatattacaggaaga
actaaaacttatgaagcaattatcaaaggtgaagctatgcctgaatctgatttaccagaa
tcattcaaagttctattaaaagagttccaagcattggcacttgatatagaattatgtgat
gaggaggataatgttataaatgttgatgaagaagttgaagttgaagaaactccaacagaa
tattcaccacagtatgaaatagatacatttggacttcatgaaatagatgaagatgctgaa
gatgttgaagatttagaatag
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integrated database retrieval system
