KEGG   Flavobacterium psychrophilum 950106-1/1: IB65_04015
Entry
IB65_04015        CDS       T03412                                 
Name
(GenBank) recombinase RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
fpq  Flavobacterium psychrophilum 950106-1/1
Pathway
fpq03410  Base excision repair
fpq03430  Mismatch repair
fpq03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:fpq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    IB65_04015
   03430 Mismatch repair
    IB65_04015
   03440 Homologous recombination
    IB65_04015
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:fpq03400]
    IB65_04015
DNA repair and recombination proteins [BR:fpq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     IB65_04015
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     IB65_04015
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      IB65_04015
SSDB
Motif
Pfam: RecJ_OB DHH DHHA1 Trigger_C
Other DBs
NCBI-ProteinID: AIT65076
UniProt: A0A076P408
LinkDB
Position
887323..889011
AA seq 562 aa
MRWTIKPKPAEEKVKHLVEVLNIKDFVASLLIQRGIETYDQAKTFFRPSLDDLHNPFLMK
DMDKAVRRIEKAIANNENIMVFGDYDVDGTTAVSLVSSYLKSYYKNVATYIPDRYDEGYG
ISYKGIDYADDNNITLIIALDCGIKSVEHVAYAKAKNIDFIICDHHRPGVFLPEAVAVLD
PKRPDCFYPYDELCGCGVGFKLIQALGENRNQTITDFIPYLDLVATAIAADIVPITGENR
VLAKFGLEVINTNPRPGIKALIQNIKKETLTITDVVFIIAPRINAAGRIKHGNYAVQLLT
EFNLPQAEEFATQIEIFNADRKDLDKQITKEALQQIENNKEENNFTTVVYQEDWHKGVIG
IVASRLIETHYKPTIVFTKSGDKLAASARSVKDFDVYNALEESAAFLEQFGGHMYAAGMT
LKEENYKKFKNKFEEVVKNSIQPDLLIPEIAIDAELKLSDINEKLVRILKQFEPFGPENM
TPVFISKNINDTGYAKTLGKDEEHLRLFVKQNNSEGFAAIGFNLANKKALTENQKPFDAV
YYIDENIWNGNVTLQLRLRDIN
NT seq 1689 nt   +upstreamnt  +downstreamnt
atgcgctggacaattaagccaaaacctgctgaagaaaaagtgaaacatctggtagaagtg
ctaaatattaaagattttgtagcttcattgctaattcaacgcggaattgagacatacgac
caagccaaaacattttttcgtcctagtttagatgatttgcacaatccatttttaatgaaa
gatatggataaagccgttcgacgaatagagaaggcgattgcaaataacgaaaatatcatg
gtttttggagattatgatgttgacggaacaaccgcagtttcattagtttcgtcttactta
aaatcctattacaaaaatgtagccacttatattcctgatcgttacgatgaaggttacgga
atctcatataaaggtatcgattatgccgatgataataatatcacacttattattgcacta
gattgtggcataaaatcggtagagcatgtggcttatgccaaagcaaaaaacatcgatttt
attatttgcgaccaccaccgtccaggagtgtttttgccagaagcagttgctgttttagac
cctaaacgacccgattgcttttatccttacgacgaactttgtggttgcggggttggcttt
aaattaatacaagctttgggtgaaaaccgaaaccaaaccatcacagattttattccgtat
ctagacttggttgccactgcaattgctgccgatattgtacctataactggtgaaaataga
gttttagcaaaatttggcttagaagtaattaatacaaatcctagaccaggaattaaggct
ttaatacaaaatattaaaaaagaaacactcacaattaccgatgtcgtttttatcattgca
ccaagaataaatgctgcgggacgaataaaacatggtaattatgctgttcaattattaaca
gaatttaatttgccacaagcagaagaatttgccacacaaatagaaatttttaatgctgac
agaaaagatttagacaaacaaatcaccaaagaagcattgcaacaaatagaaaataataaa
gaagaaaataactttacaactgttgtttaccaagaagattggcacaaaggagttatagga
attgtagcctctagactcatagaaacacattataaaccaacaattgtttttacaaaaagc
ggcgataaattagcagcttcggcacgttctgttaaagattttgatgtttataacgctcta
gaagaaagtgcagcattcctagaacagtttggcgggcacatgtatgccgcagggatgact
ctaaaagaagaaaattataaaaaatttaaaaataaatttgaagaagttgttaaaaatagt
attcagccagatttgcttattccagaaattgctattgatgccgaacttaaattatccgat
ataaatgaaaaattagtccgtattttaaagcaattcgaaccctttggtccagaaaatatg
actcctgtttttatatcaaaaaatataaacgatacgggttatgctaaaactcttggtaaa
gacgaagagcatttgcgattgtttgtaaaacaaaataatagtgaaggatttgctgctatt
ggttttaatttagccaataaaaaagcacttacagaaaatcagaaaccatttgatgcagta
tattatattgatgaaaatatttggaatggaaatgtaactttgcaattaagactacgagat
ataaactaa

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