Flavobacterium psychrophilum JIP02/86: FP1146
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Entry
FP1146 CDS
T00548
Name
(GenBank) Probable HD superfamily hydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
fps
Flavobacterium psychrophilum JIP02/86
Pathway
fps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FP1146
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fps03019
]
FP1146
Messenger RNA biogenesis [BR:
fps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FP1146
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
KH_PNO1_2nd
HDOD
KH_KhpA-B
KH-I_KHDC4-BBP
TFR_dimer
KH_NusA_2nd
KIF21A_4th
HTH_37
Motif
Other DBs
NCBI-ProteinID:
CAL43233
UniProt:
A6GYR0
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All DBs
Position
complement(431782..433344)
Genome browser
AA seq
520 aa
AA seq
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MDIITIIIAVIAGIGGGFGISKFLEKSGVSNLIKNAKKEASSILKDANLEGENIKKDKIL
QAKEKFIELKSEHEQVILTRDRKVAEVEKRVRDKESQVSGELSKAKKINDDFEAKTNEYN
TKLENLEKKQVEVEKMHKSQLQQLEVISGLSTEEAKNQLIEGLKSEAKTQAMAHIQETIE
EAKLTAQQEAKKIIISTIQRVGTEEAVENCVSVFNIESDDVKGRIIGREGRNIRAIEAAT
GVEIIVDDTPEAIILSCFDPVRREIARLALHKLVTDGRIHPARIEEVVAKTTKQIDDEII
EVGKRTVIDLGIHGLHPELIKVVGRMKYRSSYGQNLLQHSREVSKLCGIMAAELGLNVKL
AKRAGLLHDIGKVPDAESDLPHALLGMQWAEKYGEKEEVCNAIGAHHDEIEMKSLLSPIV
QVCDAISGARPGARRQVLDSYIQRLKDLEEVAYGFNGVKSAYAIQAGRELRVIVESEKVS
DDNASNLSFEISQKIQTEMTYPGQVKVTVIRETRAVNIAK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggacattataacaataataatagcagtaattgctggaataggcggcggatttggaatt
tcaaaatttttagaaaaaagtggcgtttctaatttaataaaaaacgcaaaaaaagaagct
tcttctatcttaaaagatgcaaatttagaaggagaaaacataaaaaaagataaaatacta
caagcaaaagagaaatttatcgaactgaaatctgaacacgaacaagtaattctaactcgc
gatcgcaaggttgcagaagtagaaaaaagagtacgtgataaagaatcgcaggtttcagga
gaattatctaaagcaaaaaagataaacgacgattttgaagcaaaaacaaacgaatacaat
actaaacttgaaaatctagaaaaaaagcaagttgaagtagaaaaaatgcacaaaagccag
ttacaacaactagaggtcatctcaggcttatctacagaagaagcaaaaaatcaattaatt
gaaggtttgaaaagtgaagctaaaacacaagcaatggctcacattcaagaaactattgaa
gaagcaaaactcactgcacaacaagaagctaaaaaaataattattagcaccatacaacgt
gtaggaactgaagaagcggtagaaaattgtgtctctgtttttaatatcgaatccgatgat
gtaaaaggtagaattattggtcgagaaggtcgtaacattcgtgcaatcgaagccgcaact
ggcgtagaaattattgtagacgacacaccagaggctattatcctttcttgttttgatcca
gttcgtagagaaattgcccgtttagcattacacaaattagtaaccgatggtcgtattcac
ccagcacgcatcgaagaagtagtcgcaaaaacaaccaagcaaattgatgacgaaattata
gaagttggaaaacgtacagttatcgatttaggaattcacggtttgcacccagaattaata
aaagtagtaggacgcatgaaataccgttcttcttacggacaaaatttactacaacactcg
cgcgaggtttctaaactttgtggcatcatggcagcagaattaggtctaaatgtaaaacta
gccaaaagagccggattacttcatgatattggtaaagttccagatgcagaaagcgatttg
cctcacgcacttttaggaatgcaatgggcagaaaaatacggagaaaaagaagaggtttgt
aacgccattggtgcccatcatgacgaaatagaaatgaaatctctattatctccaattgtt
caggtttgcgatgctatttccggagcaagaccaggtgcgcgtcgtcaggttttagactca
tacatacaacgtctaaaagatttagaagaagttgcctatggatttaatggcgtaaaaagt
gcctatgccatacaagcaggtcgtgaactacgtgttatagtagagagcgagaaagtaagc
gacgataatgcttctaacttatcattcgaaatttcgcaaaaaattcaaacagaaatgact
taccctggtcaagtaaaagttaccgtaattagagaaactagagccgtaaatattgctaaa
taa
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