Francisella philomiragia subsp. philomiragia ATCC 25015 O#319L: BZ13_660
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Entry
BZ13_660 CDS
T03764
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fpt
Francisella philomiragia subsp. philomiragia ATCC 25015 O#319L
Pathway
fpt03030
DNA replication
fpt03410
Base excision repair
fpt03420
Nucleotide excision repair
fpt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fpt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BZ13_660 (ligA)
03410 Base excision repair
BZ13_660 (ligA)
03420 Nucleotide excision repair
BZ13_660 (ligA)
03430 Mismatch repair
BZ13_660 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fpt03032
]
BZ13_660 (ligA)
03400 DNA repair and recombination proteins [BR:
fpt03400
]
BZ13_660 (ligA)
Enzymes [BR:
fpt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BZ13_660 (ligA)
DNA replication proteins [BR:
fpt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BZ13_660 (ligA)
DNA repair and recombination proteins [BR:
fpt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BZ13_660 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BZ13_660 (ligA)
MMR (mismatch excision repair)
DNA ligase
BZ13_660 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BZ13_660 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
BRCT_2
RNA_ligase
HHH
Motif
Other DBs
NCBI-ProteinID:
AJI74177
UniProt:
C6YV09
LinkDB
All DBs
Position
complement(642753..644789)
Genome browser
AA seq
678 aa
AA seq
DB search
MTPSDFISTDYKTLTKAQLKSYIDDLAEYLGEQSYLYHTIDKPVITDSDYDKLFRLLQDL
VDDNPQLKPSNSVLDRVGGDVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIEYDIELE
CEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVR
GEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFS
KDFVHPETQFELMNLLQSFGFTISDNMFLAKNFSEVEVYHHKMSHQRADLAYDIDGLVFK
VNNIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGG
VIVSNATLHNINEIKRKDIRVGDRVIVRRAGDVIPEVVKSLSEYRKPDAQMVEMPTNCPV
CDSTIENINDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLGAKLIEQLVAADLIKY
PADIYKLNFEQLTGLERMGAKSSQNVLDSITKSKEPSLARFIFAIGIKDVGEVSSEALAN
HFGSLESFREAKFEQLIEINDIGEIIAKNIVSFWQDSLNIQIVDELLGNSINIQNPEKIE
QAHNESFTNKTIVITGTFENYNRTELTQLLKSMGAKVTSSVSKKTDMVICGDNAGSKLIK
AQDLGVEVIFEEDLQNLL
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgactccgagtgattttatttctacagactataaaactttaactaaagcacaattaaag
tcatatattgatgatcttgcagagtatctaggtgaacaaagctatttgtatcatactata
gataagccagttattactgactcagactatgataagttattccgattattacaagattta
gtagatgataatccacagcttaagccatcaaactcagtattagatcgtgttggaggtgat
gttttagcaggatttgagactatcaagcataaaaagaaaatgacatctctggctaatgtt
tttagtctagaggagttgcgtgatttttatgacaagatagagtatgacattgagcttgaa
tgtgaacctaaaatggatggcttggctattagtatcttttataaaaatggtaagtttgat
tatgctgttacgcgtggtgatggtattcagggtgaaaaagtatccgaaaatgtcaaaacc
atccgtaatgtcccacttaaactaaatacttcaaatcctccagaagaactagaagttcgt
ggtgagattatcctagataagcaaagttttctatctcttaatgagtatatgcaaactcat
gagaataaaacttttgcaaatccgcgtaatgcagcagctggaagtattcgtatgcttgac
tcaaaagtcgtagcaaagcgaccacttaagctttatagctatggtattggctacttttct
aaagactttgtacatcctgaaactcaatttgagcttatgaacctattacaaagctttggc
tttactatcagtgataatatgtttttggcaaaaaacttctcagaagttgaagtgtatcac
cataagatgagtcatcagcgtgcagatttagcttatgatattgatggtttagtttttaag
gttaataacattaaattacaggatactattggctacactgctagaggacctaagtgggct
atagcatataagtttccagctgaagaggttgagtcagaagtgctaaatgtagagttccaa
gttggcagaacaggagcaattaccccagttgcaagacttaagccagttgcagttggtggt
gtaatagtttcaaatgcaactttgcataatatcaatgaaattaaacgcaaagatatccga
gtcggtgatagagtcattgtacgtagggcaggggatgtaattccagaagtcgtcaaaagc
ttatcagaataccgtaagcctgatgcacagatggttgagatgccaacaaattgtccagtt
tgtgattcaacaattgagaatatcaacgatcaggctatatatcgttgtacaggagggtgg
cattgtcaggctcaaactactgagcgcttgaagcactttgtctctcgtaaagcaatggat
attgataagcttggagctaaactaattgagcaacttgttgctgcagatttgatcaagtat
ccagcggatatttataagctcaattttgaacaattgacaggcttagaaagaatgggtgct
aaatcatcgcaaaatgttttagactctatcacaaaaagtaaagagccaagtttagcaaga
tttatttttgcaatagggattaaagatgttggtgaggtgtcatcagaagctttagccaat
cattttggtagtttagaaagtttccgtgaagctaaatttgagcaattaatagagattaat
gatattggtgaaattattgctaaaaatattgtttcattttggcaagattccctaaacata
caaattgttgatgaattactaggcaattctattaatatccaaaatccagaaaaaattgag
caagcgcataatgagagttttacaaataaaactattgtgattacaggaacttttgaaaac
tataaccgtacagaattgacacaacttcttaaatcaatgggtgcaaaagttacctcaagt
gtctctaaaaaaactgatatggttatttgtggtgataatgcaggaagtaagcttatcaaa
gctcaagatttaggtgttgaggttatttttgaagaagatttgcaaaatttgttatga
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