Faecalibaculum rodentium: AALO17_05140
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Entry
AALO17_05140 CDS
T04268
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
fro
Faecalibaculum rodentium
Pathway
fro03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fro00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AALO17_05140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fro03021
]
AALO17_05140
03400 DNA repair and recombination proteins [BR:
fro03400
]
AALO17_05140
Enzymes [BR:
fro01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AALO17_05140
Transcription machinery [BR:
fro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AALO17_05140
DNA repair and recombination proteins [BR:
fro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AALO17_05140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Myosin_VII_N
Motif
Other DBs
NCBI-ProteinID:
AMK53648
UniProt:
A0A140DSM1
LinkDB
All DBs
Position
451657..455937
Genome browser
AA seq
1426 aa
AA seq
DB search
MDSNKAYHELACGTKSQRRDYSKVSGKLELPNLVEIQTDSFDWFTKKGIQEVFEEIYPIE
NYGKNISLNYVRYRFDEPKYTAEESMYRECNYAAPLYVEMELEITDPETGEVRTKNEEVY
LGDFPLMTDTGTFIINGAERVIVSQIVRAPGAYFSEQYDEKIGRQNYASELIPSRGTWLE
LMTEQKKTTNGRAINVSIDRRRKILFSIFFKALGMSLGLEKNEDAYDKAPMETFLKALGR
DFQDVAEDPEHREYMDLYLLLYNAFFGKYEEIENTLLNDKVKTNEEALLSFYENQRSDEI
PTLDGSISLMQAKFFDHRRYDLTKAGRYKLKKKLNAVSRLMNQTLGQDILDVDGNVIMEK
GKHIGRDERNFLREELAKGTYMNPYPFRSEFHEEDIVTIPVAWNTGLIGRVLARDVTANG
TLLEQGMVLTGQDVDMLKAAGVKDVKIYSGLIAKPVEITPENADSVLNYGQRLFALGRLT
NEHGEDLTDDEFELLVPRYTVGVTPDRLDDAVMMDIRTRALNEPMEAWLIGSAQQELLVE
DAQGNTIKITGNDPFTEKHTVTIPDIYAFFSYDLNIMDGIGETDDIDMLGNRRIRSVGEL
IQNQFRIGLSRMERVVKERMSIQELDSLTPRKLTNIRPLTAAIKEFFSSSQLSQFMDQQN
PLAELTNKRRISALGPGGLTRDRASFEVRDVHSSHYGRICPIETPEGPNIGLISNLTTYA
KTNEYGFIQTPYRVVNKDGTVSEEAIYLSADEEADYVIAQANEVRDGKLINERVVARKNG
ETIIADKAEVELADVSPKQIVSVATACIPFLENDDASRALMGANMQRQAVPLLVPHSPFV
GTGIEYKIAKDSGVGIVSRTAGTVTYVDGLRIVVTDDEGKNHTYQLRKFTRSNASTSINQ
RPIVKQGEKVKAGDILADGPSMENGELALGQNVTIAYMTWYGYNYEDAIIMSERMVADDV
YTSIHLEEYDIDCRDTKLGPEEITRDIPNVGENAVRKLDQNGVIMVGAEVKEGDILVGKV
TPKGQSEVSPEEKLLLAIFGEKSREVRDNSLKVPHGGAGIVHSVRTFRRGDGSDLPPGVN
ERVKVYIAQKRKISEGDKMSGRHGNKGVISKILPVEDMPFTADGQPIDIILNPFGVPSRM
NIGQILEIHLGYAAKKLNQKFATPVFDGVSNEELADIMREAQMTDDGKQVLYDGQTGLPF
DERISVGVMYMIKLAHMVDDKLHARATGPYSLVTQQPLGGKAQNGGQRFGEMEVWALEAY
GAAHTLEEILTIKSDDIQGRIKTYEAIIKGKDIPEPGIPESFRVLMHELQGLAIDVRLLD
DEGQEVDITADDDEPGIINGEFTEHRHDHDQAAPETEEVLVNDMETGETPEGTVNVQAVE
ASEIQLPDEENPGDILPDENPDEEFPAIAEDEDLPAVTEKEETDAE
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
atggacagcaacaaagcgtatcacgagctcgcgtgcggcacaaaaagccagcggcgcgat
tactccaaagtcagcggcaagctggaactgcccaaccttgtggagatccagacggattca
ttcgactggttcaccaaaaaggggatccaggaagtctttgaagagatatatccgatcgaa
aactacggcaagaacatcagcctgaactacgtcaggtaccggttcgatgaaccgaagtac
acggccgaagaatcgatgtaccgtgaatgcaactatgcagctcctctctacgtggagatg
gagctggagatcaccgacccggaaaccggcgaagtgcgcacgaaaaacgaagaagtgtat
ctcggggacttcccgctgatgaccgataccggcacgttcatcatcaacggtgcggaacgt
gtcattgtcagtcagatcgtccgtgcccccggagcctatttctccgagcagtacgatgaa
aaaatcgggcgccagaactacgccagcgaactgattcccagccgcggcacatggctggag
ctcatgaccgaacagaagaagaccaccaacggccgggccatcaatgtgtccattgaccgg
cgccggaagatcctgttctcgattttcttcaaggcactgggcatgtccctgggtctggag
aaaaacgaggatgcctacgacaaggcacccatggagaccttcctgaaggccctgggacgg
gacttccaggacgtggcggaagacccggaacaccgggaatacatggatctctatctcctg
ctgtacaacgccttcttcggcaagtatgaagagatcgagaacacgctgctcaacgacaaa
gtcaagaccaacgaagaggcgctgctctccttctacgaaaaccagcgctcggatgaaatc
cccacactggacggatccatctccctgatgcaggcgaaattcttcgaccaccggcgctat
gacctgaccaaggcaggccggtacaagctgaagaagaagctgaacgcggtttcccgtctg
atgaaccagacgctgggccaggacatcctggacgtggacggcaatgtcatcatggaaaag
ggaaagcacatcggacgggatgagagaaacttcctgcgggaagaactggcgaagggcacc
tacatgaatccctatcccttccggagcgaattccacgaagaggacatcgtcacgatcccc
gtggcctggaacaccggcctgatcggccgcgtcctggcccgtgatgtcaccgcaaacggc
accctgttggaacagggcatggtcctgacgggacaggacgtggacatgctgaaggctgca
ggtgtcaaagatgtgaagatctactccggcctgatcgccaaaccggtggaaatcacaccg
gaaaacgcagactctgtcctgaactacggacagcgcctgtttgcgctgggacgcctgacc
aatgaacacggagaagacctgacagacgatgaattcgagctgctggtgccccgctacacc
gtgggtgtgacccccgaccggctggatgatgccgtgatgatggacatccgcacccgggcg
ctcaacgaacccatggaggcctggctcatcggctccgcccagcaggaactgctggtggaa
gatgcccagggcaacacgatcaagatcacgggcaacgatcccttcacggaaaagcacacc
gtgaccattcccgacatctacgccttcttctcctatgacctgaacatcatggacggcatc
ggggaaacagacgacatcgatatgctgggcaaccggcgcatccggtctgtgggcgagctg
atccagaaccagttccggatcggtctgtcccgcatggagcgcgtggtcaaggaacggatg
tccatccaggaactggattccctgactccgcggaaactgaccaacatccgcccgctgaca
gcggcgatcaaggagttcttctcctcctcccagctgtcacagttcatggaccagcagaac
ccgctggccgaactgaccaacaagcgccgtatctccgccctggggcccgggggtctgacc
cgtgaccgggcatccttcgaggtccgggacgtgcactccagccactatggccggatctgc
ccgatcgagacacctgaaggcccgaacatcggtctgatttccaacctgacaacctacgcc
aaaaccaacgaatacggcttcatccagacgccgtaccgtgtggtgaacaaagacggaacg
gtatccgaggaagccatctacctgtctgccgacgaagaagcggattatgtcatcgcgcag
gccaacgaggtgcgtgacggcaagctgatcaacgaacgcgtcgttgcccggaaaaacggt
gaaacgatcatcgccgacaaggcggaagtcgagctggcggacgtctccccgaaacagatc
gtatccgtggccacagcctgcattccgtttctggaaaacgacgatgcctcccgtgccctg
atgggtgcgaacatgcagcgtcaggccgtgcctctgctggtgccccacagcccgtttgtg
ggaaccggcatcgaatacaagattgccaaggattccggtgtgggcatcgtgtcccgcaca
gccggcaccgtgacctatgtggatggcctgcggatcgttgtcacggatgacgaaggcaaa
aaccacacctaccagctgcgcaagttcacgcgctccaatgcctccacgtccatcaaccag
cggcccatcgtgaaacagggcgaaaaggtgaaggccggcgacatcctggcagatggcccg
tccatggaaaacggcgagctggcactgggtcagaacgtgacgatcgcctacatgacctgg
tatggctacaactatgaggatgccatcatcatgtccgagcgcatggtggcagatgacgtc
tatacctccattcacctggaggaatacgacatcgactgccgcgacacgaaactgggcccc
gaggaaatcacccgtgacatcccgaacgtcggcgagaatgcagtccgcaagctcgaccag
aacggtgtcatcatggtgggcgccgaggtcaaggaaggcgacatcctggtgggcaaggtc
acacccaagggccagagcgaagtctctccggaggaaaagctgctgctggcgatcttcggt
gaaaagtcccgcgaagtgcgtgacaactccctgaaggttccccacggcggtgccggcatt
gtgcactctgtccgcacattcaggcgcggcgacggcagcgacctgccgcccggagtcaac
gaacgcgtcaaggtctacattgcccagaagcggaaaatttccgagggtgacaagatgtcc
ggacgccacggaaacaagggtgtcatttcgaagatcctgcccgtggaggacatgccgttc
acagccgatggccagcccatcgacatcatcctgaaccccttcggcgtgccgtcccgtatg
aacatcggccagatcctggagatccacctgggctatgcggcgaagaagctgaaccagaag
ttcgcgactcccgtattcgacggggtgtccaacgaggaactggcggacatcatgcgcgaa
gcgcagatgaccgacgacggcaagcaggttctgtatgacggccagacgggtctgcccttt
gacgagcggatctccgtgggtgtcatgtacatgatcaagctggcacacatggttgacgac
aagctgcacgcccgtgccacgggtccctattcgctggttacccagcagcccctgggcggc
aaggcgcaaaacggcggccagaggttcggtgagatggaagtgtgggcgctggaagcctat
ggcgcagctcacacgctggaggagatcctgacgatcaagtccgacgacatccagggccgg
atcaagacctatgaagccatcatcaagggcaaggacatccctgaaccgggcattccggag
tccttccgcgtactgatgcacgaactgcagggcctggccatcgacgtccgtctgctggat
gacgagggacaggaagtggacatcacggcggatgatgacgaaccgggcatcatcaacggc
gagttcaccgaacacagacacgaccacgaccaggcggctccggaaacggaggaagtcctg
gtcaacgatatggaaaccggggaaacaccggagggaaccgtgaatgtccaggctgtggaa
gcctccgagattcagctcccggatgaagagaatccgggggatatcctgccggatgaaaac
cccgacgaggaatttcctgccattgcggaagatgaagatcttcctgccgtaacagagaag
gaggaaactgacgccgaatga
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