Candidatus Fokinia solitaria: Fsol_00171
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Entry
Fsol_00171 CDS
T05415
Name
(GenBank) ribonuclease Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
fso
Candidatus Fokinia solitaria
Pathway
fso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Fsol_00171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fso03019
]
Fsol_00171
03009 Ribosome biogenesis [BR:
fso03009
]
Fsol_00171
Enzymes [BR:
fso01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Fsol_00171
Messenger RNA biogenesis [BR:
fso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Fsol_00171
Ribosome biogenesis [BR:
fso03009
]
Prokaryotic type
rRNA processing factors
Fsol_00171
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
RNase_E_G_Thio
Motif
Other DBs
NCBI-ProteinID:
AWD32976
UniProt:
A0A2U8BRJ3
LinkDB
All DBs
Position
176867..178609
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AA seq
580 aa
AA seq
DB search
MNLILIDSASEHECRVAVCKKSGTEMVLEALYQQNTRIQNIKGNIYLAKVVRVENALQAV
FVDYGGQYNAFLPLSNVSNEYKTRSAHNKHLKKDQLLIIQIVKEQKDEKCPLATTYITLT
GRFISVISHSSQERIRFMRKIGSDKERLKNIGNELLNSVKKNDRGLSIVFKNESEGRTKI
ELKRDFQYLVKLLDSTLQHSENKKSPVFLHAEGSFVECVIRDTYNNDIKSIIVEGKEKYK
QGLAFMKMFLPTHVDKIEQYDRSTPIFKYYDIEEKVTALYSNKVLLPSGGSIVISYTEAM
ITIDVNSGKNISESNVENTSLKTNLEAIKEIIIQIKLRGLSGTIAIDFIDLESTKNRDLL
FKEALQLGKDYNLSLRILPLNELSIMHITRQKTHNSFCEINLTKCDNCSGTGYIRAEHAT
ISAICRAVKQEISKNAELTNITVVVGAKLATQILNYTAVYDDIIRKTSDHDITFRFMIDL
SVPETMFSLTASSEVRQLANAVVPFSKLEEQSYFDEENGSTAVRAESTENVVSRNKKRFS
KFGKKKAKISAKDSIKEEATSGLRTVMRRISSLIKSKSSN
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgaatttgatactgattgatagtgcttcagagcacgagtgtagagttgctgtatgcaaa
aaaagcggaactgaaatggtacttgaggctttatatcagcaaaatactcgaatccaaaac
ataaaaggcaatatatacttagcgaaagtagtacgagtagagaacgcactgcaagcagtt
tttgtggattatggagggcagtataatgcttttctgcctttgtctaatgtgagtaatgag
tacaagacaagaagtgcgcacaataagcatctgaaaaaggatcagttgctaataatacaa
attgtgaaagagcagaaggatgaaaaatgtccgctagcaacgacttatattacgttaact
ggtcgttttatatctgtgatatcgcactcttctcaagaaagaataaggttcatgagaaaa
attggcagtgataaagagagattgaaaaatataggcaatgagctattgaatagcgtaaag
aagaatgatcgaggactgtcgatagtattcaagaatgagtctgaaggaagaacgaaaatt
gagttaaagagagattttcaatatcttgtaaagttgttggatagtactttacagcactca
gagaataaaaaaagtcctgtctttctgcatgctgaagggagttttgtcgaatgcgttatt
agagatacatataataacgatatcaaatcgattattgtagaaggaaaagaaaagtacaag
caaggactagcatttatgaaaatgtttttgccgacgcacgtagataagatagaacagtat
gatcgtagtactccaatctttaagtactatgatatagaggagaaagtgacagcgttatat
agtaataaggtacttttaccttctggaggttcgattgtcatatcgtatacggaagcaatg
attaccatagatgtgaactcaggaaagaacatcagcgaaagtaatgtagaaaatacttct
ctcaaaacgaatttagaagcgattaaggaaattattattcagataaagctacgtggttta
tccggtactattgcaatagattttatagatttggagtctaccaaaaatagagatctgctt
tttaaagaagcgcttcagcttggcaaagattacaatttatctcttagaatattgccactg
aatgagcttagtataatgcatattacaaggcaaaagacacataactctttttgtgaaatc
aatttgacaaagtgcgataactgtagtggtacgggatatattagagcggagcatgctacc
ataagcgctatatgcagagcggtgaaacaagagatatctaagaatgctgaattaactaat
atcactgttgttgtaggtgcgaagctagcaactcagatcttgaattatactgctgtgtat
gacgatattatcagaaaaacctctgatcatgatattacttttcgttttatgatagattta
tcagtaccggaaacgatgttctcacttactgcttcttctgaggtacggcaacttgcaaat
gcggtagtgccattttccaagctggaagagcagtcgtattttgatgaagagaatggcagt
actgcagtacgtgcagaaagtactgaaaatgttgtatctagaaataagaagcgtttcagt
aaatttggaaagaaaaaagcgaaaatttctgcaaaggattctataaaagaagaggctact
agtggattacgtacagttatgcgaagaatttcttctcttataaaatcaaagagttcaaat
tag
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