Francisella tularensis subsp. holarctica PHIT-FT049: X557_08990
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Entry
X557_08990 CDS
T03033
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
fto
Francisella tularensis subsp. holarctica PHIT-FT049
Pathway
fto03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fto00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
X557_08990 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fto03021
]
X557_08990 (rpoB)
03400 DNA repair and recombination proteins [BR:
fto03400
]
X557_08990 (rpoB)
Enzymes [BR:
fto01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
X557_08990 (rpoB)
Transcription machinery [BR:
fto03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
X557_08990 (rpoB)
DNA repair and recombination proteins [BR:
fto03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
X557_08990 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
Motif
Other DBs
NCBI-ProteinID:
AHH46992
LinkDB
All DBs
Position
complement(1667585..1671661)
Genome browser
AA seq
1358 aa
AA seq
DB search
MSYSYAEKKRIRKEFGVLPHILDVPYLLSIQTESYKKFLTVDAAKGRLHSGLEIVLKQSF
PVESKNGQYELHYVDYQIGEPTFDETECQVRGATYDAPLNVKLRLVVYNKDALPNEKIVE
DIREEYVYMGDIPLMTTNGTFIINGTERVVVSQLHRSPGVFFSKDDSEEGAFSARIIPYR
GSWLDFEFDSKGIIWARIDRKRKFCATVILKALGYTQEQILENFSESKTITFNSKGFALR
LDNLSNMKGELLKFDIVDAQDNVIVKKNKKLTSRDVKKIKDAGVDSVAIDFDLVSTLRVA
KDIVNEATGEVIAYANDDVTESLLESCVEVGMLELEVIDFITTERGRYISDTLKYDLTRN
TDEALVEIYKVLRPGDPPAAASVKALFEGLFFIESRYSLSDIGRMKLNARLGSDKVSKDI
YTLENSDIVGVIEELINIRDGKGKVDDIDHLGNRRVRSVGEMVENQFRIGLYRVEKGIRE
SMSLVHKDKLMPKDIVNSKPITAAIKEFFTSGALSQFMDQDNPLSEVTHKRRISALGPGG
LSRDRAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLASYARVNDYGFLEAPYRKVVDG
KVTDEIEYLSAIDEDNYVIAQASTKLDENNHFVEDIIQCRSGGEAIFTESSRVQYMDVSA
KQMVSAAAALIPFLEHDDANRVLMGANMQRQAVPTLKSEKPLVGTGMEKIVARDSGNCII
ARNVGEVAEVDSNRIVIKVDTEKSQTSNLVDIYSLTKFKRSNKNTCINQRPIVNVGDKVE
AGDILADGFATDFGELSLGHNLMVAFMPWNGYNFEDSILLSERIVKDDKYTSIHIEEFTC
VARDTKLGPEEITADIPNVSESSLAKLDESGIVHIGANVEAGDILVAKITPKAEQQLTPE
ERLLRAIFNEKASNVADSSLRMPSGTSGTVINVQVFENDKGGKSKRALKIEKELIDKARK
DFDEEFAVIESVVKSSIEQEVVGAKIQKAKGLKKGAILTKEFLATLPFSKWLEISFEDEK
LEEKVQNAREYYEEAKIAIDAKFEAKKKSITQSNELSPGVLKTVKVFVAIKKRIQPGDKM
AGRHGNKGVVSRVLPVEDMPYMEDGTPVDVCLNPLGIPSRMNIGQILEAHLGLASYGLGK
KIEKTLEKTRKAAELRKTLEEVYNSVGDKKVNLEALNDEEILTLCDNLKGGVPIATPVFD
GAKEEDIKSLLKIGGFATNGQMKLFDGRTGKPFDRHVTVGYMYMLKLDHLVDDKMHARST
GSYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLREMLTVKSDDIAGRSKMYKNI
VDGKLTMNVDVPESFNVLRNEVRALGIDMDFDYSSEEE
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atgtcttactcatacgctgagaaaaaaagaattcgtaaagagtttggggttcttcctcat
atcttagatgtaccatatttgctttctattcaaacagagtcatacaaaaaattcttgact
gtagatgcagcaaaaggaagacttcactctggacttgaaatagttttaaaacagtctttt
cctgttgagagtaaaaatggtcaatatgaacttcactatgttgattatcaaattggtgag
cctacttttgatgaaactgaatgtcaggttcgtggtgctacttatgatgcaccattaaat
gtgaagttaagattagttgtatataataaagatgctcttccaaatgagaaaattgtcgag
gacattagagaagagtatgtgtacatgggcgatattccgctaatgacaactaatggtact
tttatcattaatgggacagaaagagtagtagtctctcagttgcatagatcaccaggggtg
ttctttagtaaggatgactctgaggaaggagcattctcagcacgtattatcccatataga
ggctcatggcttgattttgaatttgactcaaaaggtattatatgggctaggattgataga
aaaagaaaattctgtgctacagttattttaaaagctcttggttatactcaagagcaaata
ttagagaatttttctgagagtaagactattacttttaatagtaaaggttttgctcttaga
cttgataacctttcaaatatgaaaggtgagctgcttaagtttgacattgtagatgctcaa
gataatgttattgttaaaaagaataaaaaattaacttcaagagatgttaagaaaattaaa
gatgcaggcgttgactctgtagctattgattttgatttggtcagcactcttagagttgca
aaagatatcgttaatgaagcaacaggtgaagtgatagcttatgctaatgacgatgttaca
gaaagtttattagagtcatgcgtagaagttggcatgcttgaattagaagttattgatttt
ataactactgaaagaggtaggtatatatctgatactttaaaatatgatcttacaagaaat
actgatgaggcacttgtcgagatatataaggtattacgaccaggtgatcctcctgcagca
gcttcagttaaagcattatttgaaggtttattctttattgaaagtagatatagcctttct
gatattggtagaatgaagctaaatgctagattaggttcggataaggtatctaaagatatc
tatactttagaaaatagtgatatagttggcgtaattgaagagcttataaatatccgtgat
ggtaaaggtaaagttgatgatattgatcatttaggtaacagacgtgtacgttctgttggc
gagatggttgagaatcagtttagaataggcctctaccgtgtagagaaaggtattcgtgaa
agtatgtctttagtacataaagataagcttatgccaaaagatatcgttaactcgaagcca
atcacagcagcaattaaagaattctttacttctggagcgttatcacaatttatggatcaa
gataacccattgtcagaagttacacataagcgtagaatatctgcattaggtccaggtggt
ttatcacgtgatagagcaggttttgaagtacgtgatgttcatgcaacacactatggtaga
ttatgtccaattgagactccagaaggtccaaatattggtctaattaactcattagcaagt
tatgctcgtgttaatgattatggtttcttagaagcaccatatcgaaaagttgttgatggt
aaggttacagatgaaattgaatacttatctgctatcgatgaagataattatgtaattgct
caagcatcaactaaacttgatgaaaataaccattttgttgaagatattattcaatgtcgt
tctggtggtgaggcaatatttactgagtcaagtagagttcagtatatggatgtttctgct
aaacagatggtttcagcagctgcggcactaattcctttccttgagcatgatgatgctaac
agggtattgatgggtgcaaacatgcaacgtcaagcggtaccgactcttaaatctgagaag
cctttagtcggtacaggtatggagaagattgttgctagagattctggtaattgtattatc
gcaagaaatgttggtgaagtggctgaagttgattctaacagaatcgttattaaagtagat
actgaaaaatcacaaactagtaatttggttgatatttatagtttaactaaatttaaacgc
tcaaacaaaaatacttgtattaaccagcgtccaatagtaaatgtgggtgataaagtagaa
gctggtgatattttagcggatggttttgcaactgattttggtgaattgtcactagggcat
aacttgatggttgcttttatgccatggaatggttataactttgaggattcgatcttacta
tctgaaagaatagtaaaagatgataagtatactagtatccatattgaagagttcacatgt
gtggctcgtgatactaagcttggtcctgaagagataactgcagatattccaaatgttagt
gagtctagtttggcaaaacttgatgaatcaggtatcgtccatattggcgctaatgtcgaa
gcaggcgatattttggtagctaagattactccaaaagctgagcaacaactaactcctgaa
gagagactacttagagcaatctttaatgaaaaagcatcaaatgttgctgatagttcatta
agaatgccaagtggtacttctggtacggttattaatgttcaagtatttgagaatgacaaa
ggtggtaaaagtaagcgagctcttaagattgaaaaagaactgatcgataaagctcgtaag
gattttgatgaggagtttgcagtaattgaatctgtagttaaatcatcaattgagcaagaa
gttgttggtgcaaaaatccaaaaagcaaaaggtcttaaaaaaggtgctatccttacaaaa
gaatttttagcaacactacctttctctaaatggctagaaatttcttttgaggatgagaaa
cttgaagagaaagttcaaaacgctagagagtattatgaggaagctaaaattgctatagat
gctaaatttgaagctaagaaaaaatctattactcagagtaatgagctatctccaggtgtg
cttaagactgttaaagtttttgttgcgattaaaaagcgtatccagccaggtgataagatg
gctggtcgtcatggtaacaaaggtgtggtttcacgcgtattaccagttgaagatatgcca
tatatggaagatggtactcctgtagacgtttgtctaaatcctttaggtatcccatcacgt
atgaacattgggcagattttagaagcacacttaggattggcttcatatggtttaggtaaa
aaaatcgaaaaaactttagagaaaactagaaaagcagctgaactaagaaagactttagaa
gaagtatataatagcgttggcgataagaaagttaatcttgaggctttaaatgacgaagag
atactaactctttgtgacaacctaaaaggtggagtaccaatcgctacaccagtatttgat
ggtgctaaagaagaagatattaaatcactactgaaaataggcggctttgcaactaatggt
cagatgaagctttttgatggtcgtactggtaagccttttgatagacatgtaactgttggt
tatatgtatatgctaaaactagatcacttagtagatgataagatgcatgcaagatcgact
ggctcatatagtctagttacgcagcaaccattaggtggtaaagcacagtttggtggacaa
agattcggtgagatggaagtttgggcattacaagcatatggtgctgcttatacattaaga
gagatgctaacagttaagtcagatgacatagcaggtagatctaaaatgtataagaatata
gttgatggtaagttgactatgaatgtagatgttccagaatcattcaatgttttaagaaat
gaagttagagcattgggtatagatatggattttgactattcatctgaggaagaataa
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