Francisella tularensis subsp. tularensis SCHU S4: FTT_1387c
Help
Entry
FTT_1387c CDS
T00214
Symbol
ligN
Name
(RefSeq) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ftu
Francisella tularensis subsp. tularensis SCHU S4
Pathway
ftu03030
DNA replication
ftu03410
Base excision repair
ftu03420
Nucleotide excision repair
ftu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ftu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FTT_1387c (ligN)
03410 Base excision repair
FTT_1387c (ligN)
03420 Nucleotide excision repair
FTT_1387c (ligN)
03430 Mismatch repair
FTT_1387c (ligN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ftu03032
]
FTT_1387c (ligN)
03400 DNA repair and recombination proteins [BR:
ftu03400
]
FTT_1387c (ligN)
Enzymes [BR:
ftu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FTT_1387c (ligN)
DNA replication proteins [BR:
ftu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FTT_1387c (ligN)
DNA repair and recombination proteins [BR:
ftu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FTT_1387c (ligN)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FTT_1387c (ligN)
MMR (mismatch excision repair)
DNA ligase
FTT_1387c (ligN)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FTT_1387c (ligN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
3190767
NCBI-ProteinID:
YP_170332
UniProt:
Q5NF60
LinkDB
All DBs
Position
complement(1431189..1433225)
Genome browser
AA seq
678 aa
AA seq
DB search
MTPNEFFSIKYHILAKAELKAYIDKLADYLSQQSYLYHTLDKPIISDSDYDKLFRLLQDL
VNDNPQFKPINSVLDRVGGEVLAGFETIKHKKKMTSLANVFSLEELRDFYDKIEYDIELE
CEPKMDGLAISIFYKNGKFDYAVTRGDGIQGEKVSENVKTIRNVPLKLNTSNPPEELEVR
GEIILDKQSFLSLNEYMQTHENKTFANPRNAAAGSIRMLDSKVVAKRPLKLYSYGIGYFS
KDFVYPETQFELMQLLQSFGFTISDNMFLAKNFSEVEEYHHKMSHQRADLAYDIDGLVFK
VNNIKLQDTIGYTARGPKWAIAYKFPAEEVESEVLNVEFQVGRTGAITPVARLKPVAVGG
VIVSNATLHNINEIKRKDIRVGDRVIVRRAGDVIPEVVKSLPQYRKSDAQMVEMPTNCPV
CDSKIENVNDQAIYRCTGGWHCQAQTTERLKHFVSRKAMDIDKLGAKLIEQLVAANLIKY
PADIYKLNFEQLTGLERMAAKSSQNVLDSITKSKEPSLARFIFAIGIKDIGEVSSDALAN
HFGSLESFRDAKFEELIEINDIGEIMANNIVSFWHDSLNIKIVEEFLAIGIKIQNPVKVE
HAYNESFTGKTVVITGSFENYGRTELTQLLKSIGAKVTSSVSKKTDMVICGDNAGSKLTK
AQELGVEVILEDNLKDLL
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgactccaaacgaatttttttctataaaatatcatattttagctaaagcagaattaaaa
gcttacatagacaaattagctgattatcttagtcaacagagctatttgtatcatacctta
gataagccaattatttctgactctgattatgataagctgtttagattacttcaagattta
gttaatgacaatccccaatttaagccgataaattcagtattagatcgtgttggaggtgag
gttttagcagggtttgaaactatcaagcataaaaagaaaatgacatctttggcaaatgtt
tttagtctagaggagttgcgtgatttttatgacaagatagagtatgacattgagcttgaa
tgtgaaccaaaaatggacggtctagcaatcagcattttttataaaaatggtaagtttgat
tatgctgttacacgtggtgatggtattcagggtgaaaaagtttcagaaaatgttaaaact
atccgcaatgtcccacttaaactaaatacttcaaaccctccagaagaactagaagttcgt
ggtgagattatcttagataagcaaagttttctatctcttaatgagtatatgcaaactcat
gagaataaaacttttgcaaatccgcgaaatgcagcagctggaagtattcgtatgcttgac
tcaaaagttgtagcaaagcgaccacttaagctttatagctatggtattggctatttttct
aaagactttgtatatcctgaaacccagtttgaactaatgcagctactccaaagttttggc
tttacaattagtgataatatgtttttggcaaaaaatttctcagaggttgaggagtatcac
cataagatgagtcatcagcgtgctgatttagcttatgatattgatggtttagtttttaag
gttaataatattaaactacaagatacaattggctacactgctagaggacctaagtgggct
atagcatataagttcccagctgaagaggtggagtcagaagtgctaaatgtagaattccaa
gttggcagaacaggagcaattacgccagtagcaagacttaagccagtcgcagttggcggc
gtaatagtttcaaatgcaaccttgcacaatatcaatgaaattaaacgcaaagatatccga
gttggtgatagagtaatcgtacgtagagcaggagatgtaattccagaagtggtcaaaagc
ttaccacaatatcgtaagtctgatgcacagatggttgaaatgccaacaaattgtccagtt
tgtgattcaaagattgagaatgttaatgatcaggctatatatcgttgtacaggaggatgg
cattgtcaggcacaaactactgagcgcttgaagcacttcgtctcacgtaaagcaatggat
attgataagcttggagctaaactaattgaacaacttgttgctgcaaatttaattaagtat
cctgctgatatttacaaactcaattttgagcaattgacaggcttagaaagaatggctgct
aaatcatcacaaaatgtcttagactctatcacaaaaagtaaagagccaagtttagcaagg
tttatttttgcaatagggattaaagatatcggtgaagtatcatcagacgctttagcgaat
cattttggtagtctagagagcttccgtgatgctaagtttgaggagctaatagagattaat
gatattggtgagattatggctaataatattgtttcattttggcatgattctctaaatatt
aagattgtagaagagtttttagctattgggattaagatacaaaatccagtaaaagttgaa
cacgcctataacgagagcttcacaggtaaaactgttgttattactgggtcttttgagaac
tatggtcgtacagaacttacacagcttcttaagtcaatcggggcaaaagttacctcaagt
gtttctaaaaaaactgacatggttatttgtggcgataatgctggtagcaaacttacaaaa
gcccaagaattaggtgtagaagttattcttgaagataatctgaaagatttattatga
DBGET
integrated database retrieval system
