Fulvivirga ulvae: LVD17_05855
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Entry
LVD17_05855 CDS
T09269
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
fua
Fulvivirga ulvae
Pathway
fua03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fua00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LVD17_05855 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fua03021
]
LVD17_05855 (rpoB)
03400 DNA repair and recombination proteins [BR:
fua03400
]
LVD17_05855 (rpoB)
Enzymes [BR:
fua01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LVD17_05855 (rpoB)
Transcription machinery [BR:
fua03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LVD17_05855 (rpoB)
DNA repair and recombination proteins [BR:
fua03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LVD17_05855 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
UII33347
LinkDB
All DBs
Position
complement(1397841..1401713)
Genome browser
AA seq
1290 aa
AA seq
DB search
MATKKDNSRISFSSIKKVIDYPDFLDIQLQSFKDFFQLETPAEKREQEGLFKVFSENFPI
TDSRENFVLEFIDYIVDPPKYSVDESIDRGLTYSVPLKAKLKLTCNDEDHEDFETIEQEV
FLGNIPYMTKKGSFVINGAERVIVSQLHRSPGVFFAQSKHTNGTKLYSARIIPFKGSWIE
FATDVNNVMYAYIDRKKKFPVTTLLRAIGYGTDKDILDLFGLSEEVKATKKDLKNAAGRK
LAARVLKTWTEDFVDEDTGEVVSIDRNEVLLERDHILTEEDIETIVDSGSKSIILHREDV
NVTDYTIIFNTLAKDNSNSEKEAVEQIYRQLRNTEAPDEQTARDIIQSLFFSEKRYDLGE
VGRYRINKKLGLDIDSDQRVLTTEDIILIVKYLIGLINSKAVVDDIDHLSNRRVRTVGEQ
LYTQFGVGLARMARTIKERMNVRDNEDFKPVDLINARTLSSVINSFFGTNQLSQFMDQTN
PLAEITHKRRMSALGPGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVHA
KVNNMGFIETPYREVNEGKVVMSGDVKYLTAEEEDTHNIAQANAPLKDDGQFVNERVKAR
FEGDFPVVEPAEVRYMDVAPNQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPLMKPEA
PIVGTGLEGRVALDSRALILAEADGEVEFVDAKKIVVKYDMDDDDRLINFDDDFKTYNLI
KFRRTNQDTCINLTPIVKKGERILKGQPLVEGYATQGGELALGRNLRVAYMPWQGYNFED
AIVISEKVVRDDIYTSIHIDEYELEVRDTKRGEEELTSEIPNVSEEAVKHLDENGIIRVG
AEVKEGDILIGKITPKGETDPTPEEKLLRAIFGDKAGDVKDASMKAPPSLRGVVIDTKLF
SRPKKDKDLRAKSKKEVEILKSKYSKQLLALRSQMIEKLTKLLDGKTSQGVKHKFGDELI
SKGMKFNGRNIEQNLFPEKNIYKDESTYNVPEEVNLISDVILDNWTTEEDVNDLVFRLVK
SYNIKRNEIAGDFKRERFTLEVGDELPAGIVQLAKVYIAKKRKLKVGDKMAGRHGNKGVV
ARIVRTEDMPFLEDGTPVDICLNPLGVPSRMNLGQIYETVLAWAGLELGRKYATPIFDGA
SMDEVATELKEAGLPEYGRAYLYDGLTGQRFDQPVTVGIAYMLKLGHLVDDKMHARSIGP
YSLITQQPLGGKAQFGGQRFGEMEVWALEAFGASHVLQEILTIKSDDVIGRAKAYEAIVK
GENMKKPNIPESFNVLVHELRGLALEITLD
NT seq
3873 nt
NT seq
+upstream
nt +downstream
nt
ttggctactaaaaaagataactcaagaatcagtttttcatctattaagaaagtaatagat
tatcccgatttccttgatatacaacttcagtcctttaaggactttttccagttggaaact
ccggccgaaaaaagggaacaagaaggattattcaaagttttttctgaaaattttccgatc
acggactccagagagaacttcgtactggagttcatcgactatatagttgatcctccaaag
tattctgtcgacgaaagtatcgatagaggtctgacgtattcagtacctttaaaggctaaa
ttaaaacttacctgtaatgatgaagatcatgaggacttcgaaacgattgagcaagaagtt
ttcttaggtaatataccatacatgacgaagaagggttcttttgtgatcaatggagcagag
agagttattgtttctcagcttcacagatcgccgggcgtattcttcgctcagagtaagcat
acaaacggcaccaaactatattctgctagaattataccctttaaaggttcatggatagag
tttgctacagacgttaataacgtgatgtatgcatacattgatcgaaaaaagaagtttcct
gtaactacacttttgagagcaattggttacggaactgataaggatattcttgacttgttt
ggcttgtctgaagaggttaaggctacgaaaaaggatcttaagaatgcagctggaagaaaa
ctggcggctagagttttaaaaacctggacagaggatttcgttgatgaggatactggtgaa
gtggtttcaatcgatagaaacgaagttttattggagagggatcacatccttacagaggaa
gatatagaaacgattgttgattccgggtcgaagtctattatacttcacagggaagatgtg
aacgttacagactatactattatattcaatacgcttgcgaaggataactcaaactctgag
aaggaagcagttgagcagatttaccgacaactgagaaatacggaagctcctgatgagcag
actgcgcgagatattattcaaagtttgttcttcagtgagaaaagatatgaccttggagaa
gtaggtagatatagaataaacaaaaagctgggccttgacatagattcagaccaaagagta
ttaactactgaggatattatccttatagttaagtacctgattggtcttatcaactctaaa
gccgtggttgatgatattgaccacttgagtaatagaagagttaggacggtaggtgagcaa
ttatatactcaatttggtgtaggtctggccagaatggcgagaaccatcaaagagaggatg
aatgttagagacaatgaagattttaaacccgttgacctgatcaatgcgcggacattgtct
tcagtgataaactcattcttcgggacaaaccagctatctcaattcatggatcagacaaac
cctcttgctgaaattacccacaagagaagaatgtctgcattgggacccggtggtctttcc
agagaaagagctggttttgaggttcgtgacgttcactacacgcactacggaaggttatgt
acaattgaaacacctgaaggtcctaacattggtttgatatcttcactttgtgtacacgcc
aaggtgaataatatgggcttcattgaaactccatacagagaagtaaatgaagggaaagta
gtgatgtcaggagatgtaaaatatcttactgctgaagaggaagatactcataacattgct
caggccaatgcaccattgaaggacgacggccagtttgttaacgaaagggtaaaagcaagg
tttgaaggagactttccagttgtggagcctgcagaggttcgttacatggacgtggctcca
aaccagattgtatcagttgcagcctctcttatccctttccttgagcacgatgatgcgaac
cgtgcattgatgggatcaaacatgcagcgtcaggcagttcctttgatgaaaccagaggcc
cctattgtcggtaccggccttgaaggaagggttgcccttgattcacgagcactgattctt
gccgaggcggacggagaagttgagtttgttgatgcaaagaagatcgtggttaagtacgat
atggatgatgatgatcgacttatcaactttgacgatgatttcaaaacatataacctgatc
aaattcagaagaacgaatcaggatacctgcataaatcttactcctatagttaaaaaagga
gaaaggatacttaaaggccagcccctggtggaagggtatgccactcaaggtggtgaattg
gcactgggtagaaatcttagagttgcgtatatgccttggcaaggatataattttgaggat
gccatcgtaatttctgagaaagtagtgcgtgatgatatttatacttcaatacatattgat
gaatatgaacttgaggttagagatactaaacgtggtgaagaggaacttacttctgaaatt
ccaaatgtaagtgaggaagctgtaaaacaccttgacgaaaacggtataatccgggttggt
gccgaagtgaaggaaggtgatatcctgattggaaagatcacccccaaaggtgaaacggat
ccaactcctgaggagaagcttctaagagcgatatttggtgataaggctggtgatgttaag
gatgcatctatgaaggcacctccatcattgagaggagttgtaatagacactaaacttttc
tccagacctaagaaagataaggatctaagagcaaaatccaaaaaagaggttgaaatactc
aaaagtaaatattctaagcaattgcttgctttgagatctcaaatgatcgagaagcttacc
aagctgctggatggtaaaaccagtcagggagttaaacacaagtttggtgatgagctcatt
agcaaaggaatgaaattcaatggaagaaatattgagcaaaatttattccctgaaaagaat
atttacaaggacgaaagtacatataatgtacctgaggaagtaaatttgatttctgatgtt
atccttgacaactggacgacagaggaggatgtaaacgatttagtattcagacttgttaag
agttacaatattaaacgtaatgagatagccggtgattttaagagagaaagatttacgctt
gaagttggagatgaattgcctgccggtattgtgcaattggctaaagtatatatagctaaa
aagagaaagcttaaggtaggtgacaaaatggctgggcggcacggtaataagggtgttgtg
gccagaatcgtcaggacagaggacatgccatttttggaagacggaacccctgttgatatt
tgcttgaatcctcttggtgtaccctcaaggatgaacctcgggcagatttatgaaacggta
ttggcatgggcaggtcttgagctgggaagaaagtatgctaccccaattttcgatggtgct
tctatggacgaagtggctacggaattgaaagaggcaggtttgccagaatatggcagagca
tacctctacgatggtctgaccggtcagcgatttgatcagccagttactgtgggtatagcc
tacatgcttaaactaggtcacctggtagatgataaaatgcacgcaaggtcaataggacct
tactcattaattactcagcaaccgcttggtggtaaagcacaatttggtggtcagagattt
ggtgagatggaggtttgggctcttgaggcattcggcgcatcacatgtactgcaggaaatc
cttaccattaagtcggatgacgtaatcggaagggctaaagcttacgaagcgatagtaaaa
ggcgaaaatatgaaaaagccgaacattcctgagtcattcaatgtattggttcatgaactt
cgtggacttgcattggaaattactttagactaa
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integrated database retrieval system
