Fusobacterium varium: FV113G1_02000
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Entry
FV113G1_02000 CDS
T05280
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
fva
Fusobacterium varium
Pathway
fva03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fva00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FV113G1_02000 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fva03021
]
FV113G1_02000 (rpoB)
03400 DNA repair and recombination proteins [BR:
fva03400
]
FV113G1_02000 (rpoB)
Enzymes [BR:
fva01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FV113G1_02000 (rpoB)
Transcription machinery [BR:
fva03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FV113G1_02000 (rpoB)
DNA repair and recombination proteins [BR:
fva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FV113G1_02000 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
BBA49853
LinkDB
All DBs
Position
224799..228299
Genome browser
AA seq
1166 aa
AA seq
DB search
MGKLVERLNFGRIKERGTMPHFLEFQLDSYEDFLQAKEAPNNRKDKGLESAFREIFPVES
SNGDIKLEYVSYELHEAEPPLNDELECKKRGKTYSTSLKVRLRLINKKSGNEIQESLVYF
GEVPMMTERGTFIINGAERVVVSQLHRSPGVSFNKEINIQTGKDLFSGKIIPYKGTWLEF
ETDKNDFLSIKIDRKKKVLATVFLKAIDFFNNNTEIKDYFLETKELDLASIFQKYKNKDE
LLSVIRTRFEGSFIKEDIYDDETGEVIAEADAVIDEALIEKMIEFKIEKVTYWEVKPEDK
LLANTVLNDSTLTKEEAVTEVFKKLRPGDLVTVESARSLIRQMFFNPQRYDLEPVGRYKM
NKRLKLNVPEDEILLTKDDIIGTMKYVINLNNGNGHTDDIDNLSNRRVRGVGELLLMQIK
AGLSKMGKMVKEKMTVQDSETLTSQSLLNTRPLNALILDFFGSGQLSQFMDQSNPLAELT
HKRRISALGPGGLSRERAGFEVRDVHDSHYGRICPIETPEGPNIGLIGSLAIYAKINKYG
FIETPYVKVVNGKADFDQIDYLAADEEEGLFIAQADTKIGEDGALLGDVVCRFGHEIVGI
SGEKVDYLDISPKQVVSVSAGLIPFLEHDDANRALMGSNMQRQAVPLLRTEAPYIGTGLE
RKVAVDSGAVVISKTDGKVVYVDAQKIVIEDPEGKEHKYRMLNFERSNQSMCLHQTPLVS
PGEEVKAGGVIADGPATRGGDLALGRNILMAFMPWEGYNYEDAILISDRLRKDDVFTSIH
VEEYEIEARNTKLGDEEITREIPNISEEALRKLDSKGIITIGSEVGPGDILVGKTAPKGE
TEPPAEEKLLRAIFGEKARDVRDTSLRMPHGSKGTVVEILELSRENGDELKAGVNKAIRV
LVAEKRKITVGDKMSGRHGNKGVVSRVLPAEDMPFLADGTHLDVVLNPLGVPSRMNIGQV
LEVHLGMAMGNYNGGTHIATPVFDGASEEQVKDYLEKLGFPRSGKVDLYDGRTGEKFDNP
VTVGRMYMLKLHHLVEDKMHARAIGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAS
NILQEMLTVKSDDVTGRTKTYEAIIKGEEMPEPDLPESFKVLLKEFQALALDVELFDKDD
NVINVDEELNKEDITTEYSPLAEFKD
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggggaaactcgttgaaagattgaattttggaaggataaaagaaagaggaacaatgcct
cattttcttgagttccaattggattcctatgaagattttctacaagctaaagaggctcca
aataatagaaaagataaggggttagaatcagcttttagagaaattttccctgttgaatct
tctaatggagatatcaagttggagtatgtttcttatgaattacatgaagcagagccacca
ttaaatgatgagcttgagtgtaaaaaaagaggaaaaacttattctacttctttgaaagta
agattaagactgattaataagaaaagtggaaatgagatacaagagtctttagtttacttt
ggagaagttccaatgatgactgaaagaggtacattcataatcaatggtgctgaaagagtt
gttgtatcacagttgcacagatctccaggagtttcattcaacaaagagatcaacattcaa
acaggaaaagaccttttctctggaaaaattattccatataaaggtacttggcttgagttt
gaaacagataagaatgatttcttgagtataaaaatagatagaaagaaaaaggtattagct
actgtattcctaaaggctattgatttcttcaacaacaatacagagataaaagactatttt
ttagaaactaaagaattagatttagcctcaatattccaaaaatataaaaacaaagatgag
cttttaagtgtaatcagaacaagatttgaaggaagttttattaaagaagatatctatgat
gacgaaactggtgaagttatagcagaagcagatgcagttatagatgaagctttaatagag
aaaatgatagaattcaaaatagaaaaagttacttattgggaagtaaaaccagaagataaa
ctattagctaacactgttttgaacgatagtacacttacaaaagaggaagcagtaacagaa
gtattcaagaaattaagaccaggtgatctagtaacagtagagtctgcaagatcacttatt
agacaaatgttttttaaccctcaaagatatgatcttgagccagttggaagatataaaatg
aataaaagattaaaactaaatgttccagaagatgaaatattattaactaaagatgatatt
attggaacaatgaaatatgtaattaatttgaataatggaaatgggcatactgatgatata
gataatctatctaacagacgggttagaggggtaggagagctgttgttgatgcagatcaaa
gcaggactttctaagatgggaaaaatggtaaaagaaaaaatgacagttcaggattctgaa
actttaacttctcaatctttgcttaatacaagaccattaaatgcacttattttagatttc
tttggatctggacagttatctcagttcatggatcagtctaatccattggcagaattaact
cataaaagaagaatatctgctttaggacctggagggctttcaagagaaagagctggattc
gaagtaagagacgttcatgactcacattatggaagaatttgtccaatagaaacaccagaa
ggaccaaatattggacttattgggtcattggcaatatatgcaaaaataaataaatatggg
tttattgaaactccatatgtaaaagttgttaatggtaaagctgattttgatcaaatagat
tatcttgcagctgatgaagaagaaggattatttattgcacaggccgatacaaaaattgga
gaagatggagcacttcttggtgatgttgtatgtagatttggtcatgaaattgtaggtatt
agtggtgagaaagttgattatttggatatttctccaaaacaagtggtatctgtatcagca
ggattaataccattcctagaacacgatgacgccaacagagcactaatgggatcaaacatg
caaagacaggctgtaccattattaagaactgaagcaccatatataggaactggattagaa
agaaaagttgctgtagattctggagctgttgttatttctaaaacagatggtaaagttgta
tatgtagatgcacaaaagatagttatagaagatccagagggaaaagagcataaatataga
atgcttaattttgaaagatctaaccaatctatgtgtttacatcaaacaccacttgtttct
cctggagaagaagtaaaagcaggaggagtaatagctgatggaccagctacaagaggagga
gatttagcactcggaagaaatattctgatggcattcatgccttgggaaggatataactat
gaggatgcgattttaatatctgatagattaagaaaagatgatgtatttacttctatacat
gtggaagaatatgaaatagaagctagaaatactaaacttggagatgaagaaataactaga
gaaatacctaatatttctgaggaagctttaagaaaactagattctaaagggataataact
attggttctgaagttggacctggagatatacttgtaggtaaaacagctcctaaaggggaa
actgaaccacctgcagaagaaaaattattaagagccatctttggagaaaaagcaagagat
gtaagggatacatcacttagaatgcctcatggatcaaaaggaactgtagtagaaatcctc
gaactttcaagagaaaatggtgatgaacttaaagctggagttaataaagcaataagagta
ttagttgctgagaaaagaaagataactgttggagacaaaatgtctggacgtcatggaaat
aaaggggttgtatcaagagtacttcctgcagaagatatgccgttcctagcagatggaaca
catctggatgttgtgcttaatccacttggagtaccttcacgtatgaatataggtcaagta
cttgaagttcatttaggtatggctatgggtaattataatggtggaactcatattgccaca
cctgtatttgatggtgcttctgaagagcaagttaaagattatcttgaaaaactagggttc
cctagaagcggtaaagttgatctttatgatggaagaactggagaaaaatttgataatcca
gtaacagttggaagaatgtatatgcttaaacttcaccacttggtagaagataaaatgcat
gccagagcaattggtccttattcactggttacacagcagccattgggaggaaaagctcaa
tttggaggacaaagacttggagaaatggaagtttgggcattggaagcatatggggcatca
aatatacttcaagaaatgcttactgtaaaatcggatgatgttacaggaagaacaaaaaca
tatgaggctataattaaaggtgaagaaatgcctgagccagatttaccagaatctttcaaa
gtattattgaaagaattccaagcattagcacttgatgttgaattatttgacaaagatgac
aatgttataaatgtagatgaagaattgaataaagaggatataacaactgagtattctcct
ttagctgaattcaaagattag
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