Fragaria vesca (woodland strawberry): 101298333
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Entry
101298333 CDS
T02666
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve00040
Pentose and glucuronate interconversions
fve01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
101298333
Enzymes [BR:
fve01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
101298333
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Gene cluster
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Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
101298333
NCBI-ProteinID:
XP_004302354
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All DBs
Position
LG6:complement(4331602..4333518)
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AA seq
447 aa
AA seq
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MVSMKFSLVLFMCSFCVILPCLKAGADSDDGTIAVFDPVLQEREKRAEIAALKAYQPDPE
SVTDELIKDVETSIERSNTTRRHLAKKIKAECTATNPIDRCWRCNPDWAKNRKQLANCVL
GFGRRTRGGKRGPIYVVHDSSDNDMANPKPGTLRHAVIQTGPLWIIFKHSMTIKLNKELI
MTSHKTIDGRGANVHIAHGAGITIQFVENVIIHGIHIHDIVSVGGGLIRDSLDHIGLRGQ
SDGDGITVFGSSHIWLDHLSMWNCYDGLTDVVQGSTAITISNCHFTRHNDVMLFGANDLY
ERDQIMQITVAFNHFGKGLIQRMPRCRFGFFHVVNNDYTHWQMYAIGGSSHPTIISQGNR
YVAPPDPKLKEITSRAYSTPEAVWKTWQWRSEGDLMENGAYFRESGEPRKGRGHFSRFDV
INAKPGSFVRRLTRFAGTLGCRVGKAC
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggtgtcaatgaagttcagtttagtgctgtttatgtgctcattctgcgtaatactaccg
tgcctgaaagcaggcgcagattccgacgatggcaccattgcggtgttcgatcctgttctt
caggagcgggagaagagagccgagatagctgcccttaaagcctatcaacccgaccccgaa
tcagttactgacgagctaatcaaagatgtcgaaacaagcatagagaggtccaacaccaca
aggaggcatctagcgaaaaagatcaaagccgaatgcacggccacaaaccctattgatcgg
tgttggaggtgcaatccggactgggccaagaaccgaaagcagctcgccaactgcgtgcta
ggattcggccgcaggacacgtggaggaaagcgaggtcccatctacgtcgtccacgactcc
tccgacaacgacatggccaatcccaagccgggaaccctccggcacgccgtgatccaaacg
ggcccactctggatcatcttcaagcacagcatgacaatcaagttgaacaaggagctaatt
atgacgagccacaagaccatcgacgggcgtggcgccaacgtgcacatcgcgcacggtgcc
ggaatcacaatccagttcgtggagaatgtgatcatccacggcattcacatacacgacatt
gtgtcggtcggaggtggcttgatcagagactcattggaccatatcggactcaggggccag
agtgacggtgatggtatcaccgtctttggctcctctcacatctggctcgaccacctctct
atgtggaactgctacgatgggcttaccgatgtcgtccagggctccaccgccatcaccatc
tccaactgccacttcactcgccataacgacgtgatgctgttcggggcaaacgatttgtat
gaacgtgaccagatcatgcaaatcacggtggcgttcaaccacttcgggaagggattgatc
cagagaatgccgaggtgcagattcggcttcttccatgttgtgaacaatgactacacccac
tggcagatgtacgccatcggcggcagctcacaccccaccatcatcagccagggcaaccgc
tatgtcgccccaccggacccgaaactcaaggagatcacaagcagggcctactcgacgccc
gaggcagtgtggaagacatggcaatggaggtcggaaggtgatctaatggagaacggagcc
tacttccgggaatcaggagagccgaggaagggccgaggccacttcagtcggttcgacgtg
atcaacgcaaagccaggctcattcgtgaggaggctcacacgctttgcaggtactcttgga
tgcagggttggcaaggcatgttaa
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