Fragaria vesca (woodland strawberry): 105350310
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Entry
105350310 CDS
T02666
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 21-like
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105350310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fve03041
]
105350310
Enzymes [BR:
fve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105350310
Spliceosome [BR:
fve03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
105350310
Complex C
U5 SnRNP specific factors
105350310
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
RXT2_N
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
105350310
NCBI-ProteinID:
XP_011460315
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Position
LG1
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AA seq
630 aa
AA seq
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MELSNKHVFLTKAEREQLALQTHQHENLFHSRPSSDDAGQKTTDRESSERQRRRDCDHLK
RKREEGARASRLEKELEAIKEQYLGSNKPKKRVIKPSEKFRFSFDWDTTEDTSRDMNPLY
QNPHEAHLLFGRGLRAGMDRREQKMQAAKQEREIRNKECRVEEEVVYDSFDMKVDRHWSD
KKLGEMNERDWRIFREDFNISYKGSKIPRPIRKWDESKLSAELLKAVNRAGYKKPSPIQM
AAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYISRLPPISEDNEAEGPYAVVLAPTREL
AQQIEKETVKLAHYLGIKVVSIVGGKSIEEQGFRIAQGCEVVIATPGRMIDCLQRRLAVL
NQCNYVVLDEADTMIDKGFEDQVVGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATM
PPAVERLARNYLRNPVVVTIGTAGTTTDLITQNVVMISKESEKFEKLKKLLDEVLGDHKN
AIVFANTKKNVSSLAKNLSKNGYHHVITLHSDLSQPQRDSNLEGFRTKRYNVLIATDAAG
RGIDVPDVSHVINYEMPSKIETYTHRIGRTGRAGKSGLATTFLTMQDTGVFYDLKKMLIQ
SNSPVPSELARHEASKYKPGTFRDRPPRRN
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggaactctcaaacaaacatgttttcttaacaaaagccgaacgtgagcagctagcccta
caaacccaccaacatgaaaatctcttccattctcgtccttcctccgatgatgcaggccaa
aaaacaacagaccgtgaatcatccgagaggcagagacgccgtgactgcgaccaccttaag
agaaaacgtgaagagggagctagggcaagccgcttagagaaggagcttgaagccattaaa
gaacagtatctaggttccaacaagcctaaaaaacgtgtcattaaacctagcgagaagttc
cggttctctttcgattgggacaccacagaagacacttctcgtgacatgaaccccttgtac
caaaaccctcacgaggcccatctcttgtttgggcgagggcttcgcgccggtatggaccgg
cgtgagcagaagatgcaggctgccaagcaagagagggagattcggaacaaggagtgccgt
gtggaagaggaagtagtgtatgattcttttgacatgaaggtggatcgacattggagtgat
aagaagcttggggagatgaatgagagggattggaggattttccgagaggatttcaatatt
tcatacaaagggtccaagattcctagacctattaggaaatgggatgagagtaaattgagt
gcggagttgctcaaggctgtgaatagggctggttataagaaaccgtctcccattcagatg
gcagcaatccctctcggtttacaacagcgtgatgttattggcattgccgagactggttcc
ggcaagactgctgcctttgttcttcctatgttaagttatatatctaggttgcctcctatt
agtgaagataatgaggctgaagggccttatgctgtggtcttggcacctactcgcgagctt
gcgcagcagattgagaaagagactgtcaagcttgcgcattacttgggaatcaaggttgtt
tctattgttggtgggaagtcaattgaggaacagggttttagaatcgcgcaagggtgtgag
gttgtcattgccacgccagggcgtatgattgattgtttgcagaggcgtcttgctgttttg
aatcagtgcaactatgtggttcttgacgaggctgatacgatgatagataaaggatttgag
gaccaggttgttggtgtcttggatgcaatgccttcgagcaacttgaaacccgagaatgag
gatgaagagctagatgagaagaggatttacagaaccacttatatgttcagcgcaactatg
cctcctgccgtggagcgactcgcccgtaattacttgaggaatcctgttgtggttactatt
ggcactgccggaaccaccactgatttgatcactcagaatgtggtcatgatcagcaaggaa
tccgagaagtttgaaaagttgaaaaaattgcttgatgaagtacttggtgatcataagaat
gctattgtatttgccaacaccaagaaaaatgttagtagtctagccaagaatttgagcaag
aatggatatcatcatgtgatcactttgcattcggatttatcacaaccacagagagactct
aaccttgaaggttttaggaccaagagatacaatgtccttattgcgacagatgctgcagga
cgaggtattgatgtgccggatgtgtcacatgtaataaactatgaaatgccgtcaaagata
gaaacgtacactcatcgaattggacgtactggtcgtgcagggaagagtggtttagccaca
acattcttgacaatgcaagacactggggtgttctatgatctcaagaagatgctcattcag
agcaacagtcctgttccttctgagctagcgagacacgaagcctcaaagtataagcctggc
acatttcgtgacagaccgccgaggcgtaactag
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