Candidatus Formimonas warabiya: DCMF_02700
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Entry
DCMF_02700 CDS
T07208
Symbol
vanB
Name
(GenBank) D-alanine--(R)-lactate ligase
KO
K15739
D-alanine---(R)-lactate ligase [EC:
6.1.2.1
]
Organism
fwa
Candidatus Formimonas warabiya
Pathway
fwa01502
Vancomycin resistance
fwa02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
fwa00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
DCMF_02700 (vanB)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
DCMF_02700 (vanB)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
01504 Antimicrobial resistance genes [BR:
fwa01504
]
DCMF_02700 (vanB)
Enzymes [BR:
fwa01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.2 acid-alcohol ligases (ester synthases)
6.1.2.1 D-alanine---(R)-lactate ligase
DCMF_02700 (vanB)
Antimicrobial resistance genes [BR:
fwa01504
]
Gene sets
Vancomycin resistance modules
Vancomycin resistance, D-Ala-D-Lac type [MD:
M00651
]
DCMF_02700 (vanB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dala_Dala_lig_C
Dala_Dala_lig_N
ATP-grasp
ATP-grasp_3
ATP-grasp_4
CPSase_L_D2
TTL
ATPgrasp_ST
GARS_A
Motif
Other DBs
NCBI-ProteinID:
ATW23851
UniProt:
A0A3G1KMZ3
LinkDB
All DBs
Position
609617..610657
Genome browser
AA seq
346 aa
AA seq
DB search
MDRLKIAIIFGGCSEEHPISVKSAQEVAKNLDIEKYEPFYIGITKNGVWKLCHCPDANWE
NGSCRRAMLSPDRSVHGLLVLEQGQYKTIRLDMVFPVLHGKLGEDGAMQGLLELSGIPYV
GCDVQSSALCMDKSLAYIVARNAGIATPNFWTVTANENIDADRLTYPVFVKPARSGSSFG
VSKVCRKEELLSAVETARQYDSKVLIEEAVVGSEVGCAILGNDMDLIAGEVDRICLSHGF
FRIHQENKPENGSENSTVIVPADISAEARLLVQETAKAVYRALGCRGLSRVDMFLKEDGK
VILNEVNTLPGMTSYSRYPRMMAAAGLTFAEVIERIVSLTWKGKRR
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atggataggttgaaaatcgcaattatattcggaggctgttccgaagaacatcccatctcc
gttaaatctgcgcaagaggtcgcaaaaaaccttgatatcgaaaagtatgaaccgttctat
atcgggattacgaaaaatggtgtttggaagctttgtcactgccctgacgcaaattgggaa
aacggcagttgccggagggctatgctgtcaccggacagaagcgtacacggattgcttgtt
ctggagcagggacaatacaaaacgatccgtttggatatggtgtttcccgttctgcatggc
aaacttggcgaggatggtgcgatgcaaggtttgttggagctttccggcatcccctatgta
ggctgcgatgtccaaagttctgctctgtgtatggacaaatcccttgcttatatcgtcgcc
agaaacgcgggaattgctacgccaaatttctggactgtcacggcgaacgagaatattgat
gccgaccggcttacttatcccgtttttgtaaagccggcccgttcgggttcatctttcggc
gtcagtaaggtatgtcgaaaagaagaattgctgagtgcagtggaaaccgcaagacagtat
gactcgaaggtgttgattgaagaggctgtcgtcggcagcgaggtaggatgtgcgatatta
gggaacgatatggatttgattgcaggcgaggtagatcgaatttgtctatctcatggtttt
ttcagaatccatcaggagaataagcctgaaaacggttccgaaaactcaacagtaatcgtt
cccgctgacatttcggcagaggcgcgcttactcgttcaggagacagcaaaagcggtatat
cgcgccttgggttgcaggggactttcgcgggtggatatgttcctgaaggaagatggaaaa
gtaatacttaacgaggttaatactttgcccggtatgacctcatacagccgttatccgaga
atgatggcagccgcagggttaacctttgccgaagtgatcgagcggattgtgtcgttgaca
tggaaaggaaaaagacgatga
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