Gossypium arboreum (tree cotton): 108452946
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Entry
108452946 CDS
T05776
Name
(RefSeq) uncharacterized protein LOC108452946
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108452946
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108452946
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108452946
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108452946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
WEF-hand
Motif
Other DBs
NCBI-GeneID:
108452946
NCBI-ProteinID:
XP_017606252
LinkDB
All DBs
Position
12:complement(86142293..86159387)
Genome browser
AA seq
2413 aa
AA seq
DB search
MLELSSTLSSHVRFLLQSLTEANADSVFRELCQFIEYGIEGNTLVLQTCLDCLSSHKTDS
KNLQSEQVVASIFRHAMDKPNFCTVFCQSLRSMDISENFLENFSKTLQLSLSEKIAVGLA
LSDSENPETRMCGKNFCMAQIEELQSNPACPDSSMQIQNMVMFLQCSSAFSRHVDSFMQM
LSLVQAKDVAQFVLTPILSDELREANFLRNIDFFDESEENDFDALLAEMEKEMSMGDIIK
ELGYGCTTDAAHCKEILSLYLPLTEVTISRILGAITRTYVGLEDNQIAFSTFSLALGCGN
SLDLPPLSSWNVDVLIKTIKQLAPNTNWVQVIEHLDHEGFYIPNETAFTFFMSVYQHSCQ
EPFPLHAVCGSVWKDIEGQLSFLKYAVAAPPEVFTFAHSVRQLAYAEAVHGHKLQIGNGN
HAWLCLDLLDVLCQLAERGHASFVRSMLDYPLKHCPEILLIGMAHVNTAYNLLQHDVTSS
VFLMIIKNAVGAGTILQLWHVNPKVVLRGFVEVQNTEPDSMIRILDICQELNILSSVLEM
MPFPSAIRLAVLASRNEVIDFEKWLSSNLNMYKDVFFEECLKFLKEIQFGGSQEFSAKPF
HHTTAVLNLYLEASTTFFKILKANSGSITSTQLLEEMERLHATIMDSTSKLQNGGTTVSS
PSDGYGDEIEAEANSYFHQMFSGQLTIDAMVQMLARFKESSVKREQSIFECMIANLFEEY
RFFHKYPERQLKIAAVLFGSVIKQQLVTHLTLGIALRGVLDALRKPADSKMFLFGTKALE
QFVDRLIEWPQYCNHILQISHLRATHSELVAFIERALARISSGHLESTGSNNPSVHHQVS
SQVSPGNGELNSSSIIQSGPQLSSSLQLPRHDSSLDDRNKASAASSNDVKPLLPSVGQPS
VASLSDASSIQKPQNAVTSASMLSSSPGFVRPSRGVTSTRFGSALNIETLVAAAERRETP
IEAPTSEIQDKISFIINNISVANIEAKGKEFTEILTEQYYPWFAQYMVMKRASIEPNFHD
LYLKFLDKVNSKALNKEIIQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRN
QVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILALLAEI
YSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKRELEGNPDFSNKDFGASQPQMV
PEAKTGIISPLNHVDIPLEVASPPNPGGHTHLLSQYAGPLRLSSGALVEDEKLAALGLSD
QLPSAQGLFQATPSQSPFSVSQLSTPIPNIGTHVIINQKLSALGLHLHFQRVVPIAMDRA
IKEIVAGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEP
LRGSISSQLRSSLQGLNVGSDLLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAN
QLALRRKHRDPAFFDPSMYGQGSMGVVPEALRPKPGHLTVSQQRVYEDFVRLPWQNQSGQ
TTHTMSAGPSTSPGDTDLTGTFGSTSGQVTPGYTSGPGNLGQVDIASEAVETTSASLLSV
PSIHIGSGTGLTQQTTENDPLNASFPSTTSAPELLSVETTDAVKEFGPTSQSLPSPAATE
RLGSSISDTSLSTRDALDKYQIVAQKLENLVTSDGREVDIQGVISEVPEIILRCVSRDEA
ALAVAQKVFKGLYENASNSLHVSAHLAILAAVRDVCKLAVKELTSWVIYSEDERKFNKDI
TVGLIRSELLNLAEYNVHMAKYIDGGRNKAATEFAVSLLQTLVSDESRVISELHNLVDAL
AKVALKPGAPESLQQLIEMIRNPSASMAALSSATVAKEDKAKQSRDKKGPNHAPANREDN
SSMEALEPDPAGFKEQVSMLFAEWYQICELPGANDGPCNHYILQLYQNGLLKGDDMTERF
FRIITELSVAHCLSSEVMSSGALQSPQQAQTLSFLAIDIYAKLVLAILKYCPVEQGSSKL
FLMSKILTVTVRFIQKDAEDKKASFNPRPYFRLFINWLLDLSSLDPVTDGANFQILTAFA
NTFHALQPLKVPSFCFAWLELVSHRTFMPKLLTGNSQKGWPYVQRLLVDLLQFLEPFLRN
AELGVPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMR
LPDPSTPNLKIDLLPEIRESPRILSEVDAALKAKQMKADVDEYLKTRPQGGSSFLTELKQ
RLLLSPSEAASAGTRYNVLLINSLVLYVGMQAIQQLQSRVPHAQATANTVPMSVFLVSAA
LDIFQSLIGDLDTEGRYLFLNAIANQLRYPNSHTHYFSFILLYSFAEANQEIIQEQITRV
LLERLIVNKPHPWGLLITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVARSCGGLKPVD
EGMVSGWVSETAH
NT seq
7242 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagctttcctccacactctcaagccacgttcggttcttgctgcagtccttgacc
gaagccaacgctgattctgtttttcgagaactctgccagttcattgaatatggaatcgaa
ggaaacactctggtgctgcaaacctgtttggattgcttgagttctcacaaaacagattca
aagaatttgcaatctgaacaagttgtagcctcaatttttagacatgctatggacaagcca
aacttttgtactgtcttctgtcagtccctaagaagtatggatatcagcgagaatttcctg
gagaatttctcaaaaacactgcagttatctctgtctgaaaaaattgctgttggtcttgct
ttatctgattctgaaaatccagagacaagaatgtgtggtaagaatttttgtatggctcag
attgaggaattgcagtctaatcctgcctgtcctgattcttccatgcaaattcagaatatg
gttatgttcctccagtgctccagtgctttttccaggcacgtagattcctttatgcagatg
ttatctctagttcaagccaaagatgttgcacagtttgttttaactccaatactttcagat
gaattgcgcgaggctaatttcttaaggaatatagatttcttcgatgaatctgaggagaat
gattttgatgctcttttagcagaaatggagaaggaaatgagcatgggggatatcattaag
gaactaggttatggatgcaccactgatgctgcacattgcaaagagattttatctctttat
ttacctctgactgaggtgactatatctaggatacttggtgcaattacccgcacctatgtt
ggtcttgaggacaaccaaattgcattttcaacatttagcctggcccttggttgcgggaat
tcattggatttgcctccattgagctcatggaatgttgatgttcttataaaaactataaag
caactcgcacccaataccaactgggttcaagttattgaacacctggatcacgaggggttc
tacattcctaatgagacggcattcactttcttcatgtctgtgtatcaacattcgtgccag
gaacccttccctctccatgctgtctgtgggtccgtgtggaaggatattgaaggtcagcta
tcttttctaaaatatgctgtagcagcaccgccagaagtatttacctttgcccattcagtg
aggcagctggcctacgcggaggcagtgcatggacataagcttcagattggaaatggaaat
catgcctggttgtgtctggacctcttagatgtgctgtgtcaactagctgaaagaggtcac
gccagttttgttcgatcaatgctcgattatcccttaaaacactgccctgaaatcctgctt
attgggatggctcatgttaatacggcttataatctcctgcagcatgatgtgacttcttca
gtttttctaatgataattaaaaatgctgtgggtgctggtacaatacttcaactttggcat
gtgaacccaaaagttgtcttacgtggatttgtagaagtacagaatactgagcctgacagc
atgattagaattttggatatctgtcaagaattaaatattctatcatcagtgttggagatg
atgccttttccttctgccatcagattagcagtccttgcttccaggaatgaggttatagat
tttgagaagtggttgagtagtaatctgaatatgtataaagatgttttctttgaggagtgc
ctaaagttcttgaaggagatacaatttggtggatcacaagagttttctgccaaacccttc
catcatactactgctgttttaaatctttatttggaagctagtaccacttttttcaagatc
cttaaagctaatagtggctccataacctctactcagcttcttgaggaaatggaaaggttg
catgcgacaattatggattctacttcaaagctgcaaaatggtgggacaacagtttcttcc
ccctctgatggatatggagatgaaattgaggcagaagcaaattcttacttccatcaaatg
ttttctggtcagttgaccattgatgcaatggttcaaatgcttgcacggttcaaggaatct
tctgtgaaaagggagcaatcgatatttgagtgcatgattgcgaatttgtttgaagaatac
cgattttttcataagtatcctgaaagacagctcaagatcgccgcagttctctttggctct
gttatcaagcagcaacttgtaactcatctcacccttggaattgccttgcgtggtgttcta
gatgcattgcgtaaacctgcagattcaaaaatgtttttgtttggaactaaagccttggag
cagttcgtggatcgtctgattgagtggccgcagtattgcaaccatattttacagatttct
cacctgcgtgccactcactcggagcttgttgcttttattgaacgagctcttgcaaggatt
tcatcagggcatttggagtcaactgggagcaacaacccttctgttcatcaccaagtttcc
tctcaggtgtccccgggaaacggggagttgaatagctctagcatcattcaatctgggcca
caactttcatcttcactgcagcttccaagacatgatagttctcttgatgatcgtaacaaa
gcctctgctgcatcatcgaatgatgtgaaaccacttctaccttctgtagggcagccttca
gttgcttctctaagtgatgcttctagcattcagaaaccgcaaaatgcagtaactagtgca
tctatgctgtcttcatcccccggttttgttcgtccttctcgtggagtcacttctactaga
tttggctctgctctgaacattgaaacgctagttgctgctgctgagagaagagagacaccc
atagaggctccgacatctgagatccaggacaagatatcattcataatcaataatatttca
gttgcaaatattgaagccaaagggaaagagttcactgaaatattgacggagcagtattat
ccctggtttgcccagtacatggttatgaaaagagctagcattgaaccaaattttcatgat
ttgtatttgaagttccttgacaaagttaactcaaaggctttgaataaggagattatccaa
gctacatatgagaactgcaaggtcttgttgggatctgagcttataaagtcaagctctgaa
gagcggtcattgctaaaaaatttgggtagttggcttggaaagttaacaattggccggaat
caagttttgagagctcgtgaaatagatcccaaatctctgattatagaggcatatgagaag
ggattgatgattgcagttatcccatttacttcaaagattcttgagccatgccaaagcagt
ctggcatatcaacctcctaatccatggaccatgggcattttggcattactagctgagatt
tattcaatgccaaacttgaaaatgaatctcaagtttgacatagaggttctattcaagaac
cttggtgtggatatgaaggacataacaccgacttctctcctcaaggatcgtaaaagagaa
cttgaagggaatcctgatttttctaataaagattttggagcatctcaaccccagatggtt
cccgaagctaaaacaggaataatttctccacttaatcatgttgacatacctctcgaggtt
gccagtccacctaatcctggtggccacacacatttgctatctcagtatgctggtcccttg
cgtctttcttctggtgcgttggtggaggatgaaaaactagcagctttaggcttgtctgat
cagcttccttctgcacaagggctatttcaagccactccttcacaatcgcctttttctgtt
agtcagctttcgacgccaataccaaacatcggaactcatgttattatcaatcagaaacta
agtgctctaggcttgcacttgcattttcagagggtggttccaattgcaatggacagagct
attaaagagattgtagctggtattgttcagcgcagtgtttccatagcaactcaaacaacc
aaggagcttgttttaaaggattatgctatggaatcagatgagacacggatttataatgca
gcacacctgatggtagcaagtttggctggaagtctggcacatgtaacatgcaaggaacct
ctacgtggctctatatcaagtcagctgagaagttcacttcaggggttgaatgttgggagt
gatcttcttgaacaagctgttcagcttgtgacaaatgataaccttgatcttggctgtgcg
gtcatcgaacaagctgctactgataaggcaatacaaaccattgatggagaaatagctaat
caacttgctttaagaagaaagcatagggatcctgcattttttgatccaagcatgtatgga
caaggttctatgggtgtggtgcctgaggctcttcgacctaaaccaggtcacttgactgtg
tctcagcagcgagtttatgaggactttgttcggcttccttggcaaaatcaatctggccag
accacgcatactatgtctgccggtccttcaacttcacctggtgatactgatctaactggc
acatttggttctacatctgggcaagttacccctggttacacatctggcccaggaaacttg
ggacaagtagatattgcttctgaggcggttgaaactacatcagcatccctattgagtgtt
ccctcgattcatattggctcaggaactggtcttacacagcagactaccgaaaatgatccc
ctgaatgcttcattcccttcaacaacttcagctcccgagttactttcagttgaaacaact
gatgctgtaaaagaatttggacctacatcacagtcgttaccttcacctgctgctactgag
cgtctaggaagtagcatctcagacacttcattgagcacaagggatgcattggataaatat
cagattgttgctcagaagttggaaaatttggtgacaagtgatggtagagaagttgacatt
cagggagtgatctctgaggtacctgaaatcatactcagatgtgttagtcgggacgaggct
gcactggctgtggctcaaaaggttttcaaaggcttatatgagaatgcatcaaacagtctt
catgttagtgctcaccttgctattctagctgctgtgcgagatgtttgcaagctcgctgtt
aaggagcttactagttgggtgatatattcagaagatgagcggaagttcaacaaagatatc
actgttggccttattcgaagtgaattgctgaaccttgcagagtacaatgttcatatggca
aaatatattgatgggggaaggaataaagctgcaacggaatttgcggtgtcccttcttcaa
actttggtctctgatgaatccagagtcatctcagaactccataatcttgttgatgctctg
gcaaaggttgctttaaaacctggagctcctgaatcattgcaacagttgattgagatgatc
agaaatccatctgctagtatggctgcattatccagtgccactgttgcaaaggaggataag
gccaaacaatctagagacaaaaagggacctaaccacgcaccagctaacagggaagataac
agtagtatggaggctctagaaccagatcctgcaggcttcaaggagcaggtctccatgttg
tttgcagaatggtatcagatttgtgagcttcctggtgcaaatgatggaccttgtaatcat
tacatcctacaattgtatcaaaatggactgctcaaaggggatgatatgacagaacgcttt
ttccgtattatcacggaactatctgttgcacattgcctatcttctgaggtaatgagttct
ggggcattgcaatcacctcaacaggcgcagactctttctttccttgccattgatatttat
gcaaaacttgtgctagcaatcctcaagtattgcccagtggaacagggatcaagtaaactc
tttcttatgtccaagattttgaccgtgactgtgaggtttatacaaaaagatgccgaggat
aagaaagcatcttttaatccgagaccatatttcagattatttatcaactggctgttagat
cttagttccttggaccctgtcactgatggtgcaaattttcagattttgacggccttcgcc
aacacatttcatgctctccagccccttaaagttccttccttctgctttgcatggctagag
cttgtcagtcataggactttcatgccgaaattgctcactgggaattctcagaagggttgg
ccctatgtccaacgtttgctggtggacttgcttcagttcctggagccgtttttgaggaat
gctgagcttggagttccggttcattttctgtataaaggcacactaagggtgctgctggtt
ctgcttcatgactttccggagttcctgtgtgattatcattttaccttctgtgatgtgatt
cccccgagctgcatacaaatgcgaaatatcatccttagtgcttttccacgcaacatgagg
ctaccagatccatctactcccaacttaaagattgatttgcttccagaaatcagagaatca
cctcgcatcttatccgaggttgatgctgctcttaaagcaaaacagatgaaggctgatgta
gatgagtatctcaagacaaggccacaaggaggatcttcgtttctaactgaattgaaacaa
agactgctcctttcaccaagtgaggcagcatctgctggcacccgttataatgtactgtta
atcaactcactggtgctttacgttggaatgcaggccatccaacaactgcagtcaagggta
cctcatgcacaggcaacagcaaacactgttccgatgtctgtgttcttggttagtgctgcc
ttggatatcttccagagtctaataggggaccttgatacggaggggcgttatcttttcctt
aatgcaattgctaaccaattgcgatatccaaacagccatacacattacttctccttcatc
ttgctatactcatttgctgaagcaaatcaggaaattatccaagagcaaattacaagagtt
ctgttggaacggctaattgttaataaaccacatccatggggtctcctcattaccttcatt
gagctcataaagaatccaagatacaatttttggaatcgttcattcataaggtgtgcacct
gagattgagaaactgtttgaatcggttgcaagatcatgtggaggtctcaaacctgtggat
gagggtatggtttctggttgggtatctgaaactgcacattaa
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integrated database retrieval system
