Gossypium arboreum (tree cotton): 108455158
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Entry
108455158 CDS
T05776
Name
(RefSeq) probable polygalacturonase At1g80170
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab00040
Pentose and glucuronate interconversions
gab01100
Metabolic pathways
Module
gab_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108455158
Enzymes [BR:
gab01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
108455158
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Motif
Pfam:
Glyco_hydro_28
Pectate_lyase_3
PAAT-like
Motif
Other DBs
NCBI-GeneID:
108455158
NCBI-ProteinID:
XP_017609247
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Position
11:complement(27093743..27095946)
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AA seq
383 aa
AA seq
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MATLKIFFFVLLIQCTIFTGSSRQLKKSNVNIDSYGDNTFNVISFGAIGDGKKDDSKGFK
RAWDAVCDSSTPSPTFLVPQGKTFLLQPLTFNGKHCNSNNITFQIDGRIIAPTKPSAWEC
NTNCHHWIGFKNFDGLHIQGSGTINGQGDNWWKLSCKDNQKSCQLRKPTGFMIGHSKNVD
IKGLTFEDSPKMHIAFEDSTSIHATQLTIKAPGNSPNTDGIHIQRSTNVSIHNTTIQTGD
DCISIGDGSKYINITNIECGPGHGISIGSLGIMGKTEEVEFVHVRNVSFHGTTNGVRIKT
WQTSAVKINNIAYENINGTSHKETAVQLSCSKSSPCRNITMKNINLRNEKQKGKTSSYCL
NAHGLRNGRVHPNVPCLDKHDNF
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atggcaactttgaaaatcttcttctttgtccttttgatccaatgcactatattcactggc
tcttctcgtcagttgaagaagagcaacgtaaatattgatagctatggtgacaatacattc
aatgtcattagctttggagctattggagatggaaagaaggacgattctaaggggtttaag
cgtgcatgggatgctgtttgcgattcatcaactccgtcaccaacctttcttgtacctcaa
gggaagacgtttctgctgcaacctttaactttcaacggcaaacattgcaactctaataac
attactttccagattgatgggagaatcatagccccaaccaaaccttctgcatgggaatgc
aatacaaattgtcaccattggattggctttaagaatttcgatggtctccacattcaagga
tctggtaccatcaatggccagggagataattggtggaaactttcttgcaaagataaccaa
aagtcgtgccaacttcggaaaccaacgggttttatgataggacactccaagaatgtagat
atcaaaggtttaacctttgaagacagtcccaaaatgcacattgcatttgaagactctact
tcgattcatgccacacaacttacaatcaaagctcctggaaacagccccaacactgatggc
attcacatccaacgttccaccaatgtctctatccacaatacaaccattcaaactggtgat
gattgtatatcaattggagatggctctaaatatatcaatattactaacatcgaatgcggt
ccgggtcacggaataagcattgggagccttggaattatggggaaaactgaggaagttgaa
tttgttcatgtaagaaatgtttctttccatggaacaactaacggagttagaatcaaaact
tggcagacatcagctgtgaagattaacaatatagcttatgaaaacatcaatggcacatca
cataaagaaacagcagtacaactttcatgtagcaaatccagtccttgtaggaacattacc
atgaaaaacattaacttgagaaatgagaagcaaaaaggcaaaacttcatcgtattgcctc
aatgctcatggcttgagaaatggaagggtccatcctaatgtaccttgtttggacaaacat
gataatttctag
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