Gossypium arboreum (tree cotton): 108464484
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Entry
108464484 CDS
T05776
Name
(RefSeq) probable pectate lyase 12
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab00040
Pentose and glucuronate interconversions
gab01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108464484
Enzymes [BR:
gab01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108464484
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
108464484
NCBI-ProteinID:
XP_017620302
UniProt:
A0ABR0QQJ6
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Position
2:113388027..113392816
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AA seq
481 aa
AA seq
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MLSISCIVLFFLLSSFFPFTISTFNLTVPIPHPNPNEVAQEVQRRVNASISRRETLQTTQ
KDISSCLTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQYAKGGKGGEYYIVTDSSDDDAV
TPRPGTLRYAVIQEEPLWIVFPSNMHIKLKQELIFNSYKTLDGRGANVHITGGGCITLQY
ISNVIIHNVHIHHCYQSGEANVRSSPTHFGWRTESDGDGISIFGAKDIWIDHCSLSHCKD
GLIDAVMGSTGITISNNFFSHHNEVMLLGHSDDYEPDSGMQVTIAFNHFGEKLVQRMPRC
RRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPSNPNAKQVTKRVDTDEGDWKGW
NWRSEGDVMVNGAYFVASGEGVEFKYEKAYSVEPKSAVLIDQLTMHSGVLGVGGRDNNLG
KWSSGANGGGSGFDSGDDEDDDYSDDMSGSDISLSTPFLPLFIAMSSFLLLCFEPITSPM
L
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgttgtccatcagctgcattgtcttgttcttcctcctctcctcattttttcccttcact
atatccacattcaacctcaccgttcctatcccacatcccaatcccaacgaagttgctcaa
gaagttcaaaggagagtaaatgcttcgatttcaagaagggaaaccttacaaacaacccaa
aaagatatatccagttgtttaacaggtaaccccattgatgattgttggaaatgtgaccct
gattggcctaacaatcgacaacggttagccgattgtgccatcggtttcggtcaatacgct
aagggaggcaaaggtggtgagtattacatcgtgacggattcgtccgatgacgatgccgtg
acaccaaggccaggaacacttaggtatgcagtgatacaagaagagccattgtggattgtg
ttccctagtaatatgcacattaagctcaaacaagaacttatatttaatagctataagaca
ttggatggacgtggggctaatgtgcatattaccggcggtgggtgtattactttgcaatat
atcagcaatgtcattatccacaatgtacacatccaccattgttatcaatcaggtgaggca
aatgtaagatcaagtccaacacatttcgggtggagaacagaatctgatggtgatgggatc
tccatctttggagcaaaagacatatggatagatcattgctccttatcacattgcaaagac
gggttgattgatgcagtgatgggatcaacagggatcaccatatccaacaatttcttctct
catcacaatgaagtgatgttgttgggtcatagtgatgactatgagcctgattcagggatg
caagtcaccattgcctttaaccatttcggtgaaaagctggttcaaaggatgcctaggtgc
cgacgagggtacattcatgtggttaataatgatttcactcaatgggagatgtatgctatt
ggtggtagtggaaaccccaccattaatagccaagggaaccgttatactgcccctagtaat
cccaatgccaaacaggtgacaaagagagtggatacagatgaaggagattggaaagggtgg
aattggagatcagaaggtgatgtgatggtgaatggagcttactttgttgcctccggtgaa
ggtgttgagtttaagtatgaaaaagcttatagtgttgagcctaaatcagctgtcctcatt
gaccaactcaccatgcactccggtgttcttggagttggtggcagggacaacaatttgggg
aagtggagcagcggagccaacggcggtggaagcggttttgactcgggtgatgacgaagac
gacgactattctgatgacatgtcgggaagcgacatatcgttatcaactccatttttacct
cttttcattgcaatgtcaagctttttgttgttgtgttttgaacctattacatcacccatg
ttgtga
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