KEGG   Gossypium arboreum (tree cotton): 108473467
Entry
108473467         CDS       T05776                                 
Name
(RefSeq) splicing factor SF3a60 homolog
  KO
K12827  splicing factor 3A subunit 3
Organism
gab  Gossypium arboreum (tree cotton)
Pathway
gab03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:gab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108473467
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:gab03041]
    108473467
Spliceosome [BR:gab03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    108473467
 Complex B
    108473467
 Complex C
   U2 SnRNP specific factors
    108473467
SSDB
Motif
Pfam: SF3a60_Prp9_C SDE2_2C SF3A3 SF3a60_bindingd LLPH Desulfoferrod_N Vesi_VP2 EF-hand_15 ATPgrasp_N
Other DBs
NCBI-GeneID: 108473467
NCBI-ProteinID: XP_017630524
LinkDB
Position
11:101308518..101315011
AA seq 509 aa
MSSTLLEVTRAAHEDVEQLERLIVKDLQNDPPTAKDRLYQSHRVRNNIDTIISTTEKLIE
IYEDKDNARKDEIAALGGQTATGINVFSAFYDRLKEIREYHRKHPAARLVNANEDDEALL
KEEPVIEFSGEEAFGRYLDLHELFNQYINSKFGSKIEYSAYLDVFSQPHNIPWKLKSTRQ
YREYMENLLEYLIYFFQRTEPLQDLDRIFSKVEAEFEEQWANGQVQGWEKQGQENEDDPA
QHTMIDLDYYSTVEELMEVGPEKLKEALASLGLKTGGTVQQRAERLFLTKHTPLEKLDKK
HFAKGSLGPRQNGSTAVSQDINSLKHIALMEAKMKKLADLLSKTIEQTKENVVKKQALTY
EEMEQEREEEETQVDTESDDEDQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICG
NYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITNIQEAQELWEKIRERQGVNKWR
PDLEEEYEDKEGNIYNKKTYTDLQRQGLI
NT seq 1530 nt   +upstreamnt  +downstreamnt
atgtcgtcgactctactcgaggtgactcgggctgctcatgaagatgtggaacagcttgag
cggcttatagtgaaggacctgcaaaatgatccgcctactgccaaagatagattgtatcag
agccaccgcgtccgcaataatattgacaccatcatctccaccactgagaagctaattgag
atatacgaagataaagacaatgctaggaaagatgaaattgctgctcttggaggtcaaacg
gctactggaattaatgtctttagtgcattttatgatagattgaaggagattcgtgagtac
catagaaagcacccggctgctcgacttgtcaatgctaatgaagatgatgaggctttactc
aaggaagaaccagttattgagttcagtggcgaggaagcctttggtcggtacctggacctg
cacgaattgttcaatcagtacattaattctaaatttggatccaaaattgaatactcagct
tacctcgacgtcttttcacagccgcacaatatcccttggaaattgaagtcaacacggcaa
tacagggagtacatggaaaatttgctggagtatcttatttacttctttcagaggactgaa
ccactgcaagatcttgacagaatcttttccaaggttgaggctgagtttgaggagcagtgg
gctaatggccaggtacaaggatgggaaaagcaaggtcaagaaaatgaagatgatcctgcg
caacataccatgattgatcttgattattacagtacagttgaagagcttatggaagtgggt
ccagaaaagttaaaggaggctttggcatcattaggactaaaaactggtggtactgtccag
cagcgtgcagagaggcttttcctaaccaagcacacacctctggaaaagctggacaaaaag
cattttgcaaaaggctcactcggacctcgacaaaatgggtctactgcagtttcacaagac
attaacagtctgaaacatattgcattgatggaggccaagatgaagaaactcgctgattta
ctgagtaagacaattgaacaaacaaaagaaaatgtggtaaagaagcaagcattgacgtat
gaggaaatggaacaagaacgtgaggaggaagagacacaagttgacacggaaagtgatgat
gaagatcaacagatctataatcctcttaaattgccaatgggttgggatggcaagcctata
ccttactggctttacaaacttcatggtcttggtcaggagtttaagtgtgagatttgtggg
aactacagctactggggccgtcgggcttttgagaggcatttcaaagaatggcggcatcag
catggcatgcgatgccttggtattccgaacaccaagaactttaatgaaatcaccaatatt
caggaagcacaagaattgtgggagaagatacgagaacggcaaggagtgaacaagtggcgt
ccagatcttgaagaagaatacgaagataaagagggcaacatttataacaagaagacgtat
accgatctgcagcggcagggactgatttaa

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