Gossypium arboreum (tree cotton): 108483939
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Entry
108483939 CDS
T05776
Name
(RefSeq) sm-like protein LSM1B isoform X1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108483939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108483939
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108483939
mRNA degradation factors
5'-3' decay
Lsm complex
108483939
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
108483939
NCBI-ProteinID:
XP_017642980
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All DBs
Position
6:complement(121195875..121198390)
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AA seq
128 aa
AA seq
DB search
MSWAGPDDIFLSTSLATYLDKKLLVLLRDGRKLLGLLRSFDQFANVVLEGACERVIVGDL
YCDIPLGQYVIRGENVVIIGELDLEKEELPSRMNPVSEDEIKRAQKAEREATDLKGSMRK
RMEFLDFD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggctggccctgatgatatctttctctccacctctcttgccacctatcttgac
aagaaactccttgtcctgctcagagatggccgaaagcttttgggattattgcgttctttt
gatcaatttgctaatgttgttctagaaggagcttgtgagcgagttatcgttggagatttg
tactgtgacatccccttaggtcaatatgtaatccgtggggagaatgttgtcataatagga
gagctggacttggaaaaggaggagcttccctcacgtatgaatcctgtatcggaagacgag
attaaaagggctcagaaagcagaacgggaagcaacagatctaaagggctccatgaggaaa
agaatggagttccttgattttgattaa
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