Gossypium arboreum (tree cotton): 108489043
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Entry
108489043 CDS
T05776
Name
(RefSeq) vacuolar protein sorting-associated protein 54, chloroplastic
KO
K17600
vacuolar protein sorting-associated protein 54
Organism
gab
Gossypium arboreum (tree cotton)
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gab01009
]
108489043
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gab04131
]
108489043
Protein phosphatases and associated proteins [BR:
gab01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108489043
Membrane trafficking [BR:
gab04131
]
Endosome - Golgi transport
Tethering complex
GARP complex
108489043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54
Vps54_N
EXOC6_Sec15_N
Motif
Other DBs
NCBI-GeneID:
108489043
NCBI-ProteinID:
XP_017648771
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Position
10:385647..396152
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AA seq
990 aa
AA seq
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MDLQPSPSGRSSTVGRISSFSVADSGGQTLSSVLNNPHAGKLEASWGWWSVAPPEFAPLT
STKAACDLTRSDFQSYVSSISDSYYRFEDIRNHTTKEQTLDVDNIGEALVACLREVPALY
FKEDFALEDGGTFRAACPFTDVSENIMLQEKLSHYLDVVELHLVKEISLRSNSFFEAQGQ
LQDLNVKIVEGCNRIRDLKETIRLVDTDLVDSARQIQELNATRTNLLALQHKLKLILSVN
QALSALKLLVASSECAGALDIIDDLQHLLDGDELSGLHCFRHLRDHVVTSIDSINSILSA
EFMRASIHDKGDKDSVILLKAKARASISLNGEDVGVNLDEEETTNFRDRLLPLIIGLLRT
AKLPFVLRTYHDTLTADMKTAIKTAVAELLPVLVGQPPESDMGAEHTVDADGGGLSLASK
LRSLSSGSFVQLLAAIFKIVQAHLVRAAEVKRAIEWVMCNLDGHYAADSVAAAIALGAMV
AESSQESNGQGGALPLSASLRSTSKVLSSPGKGSDAISPSNLSKNFRADVLRENAEAVFA
ACDAAHGRWAKLLGVRALLHPKLRLQDFLSIYNITQEFITSTEKVGGRLGYSIRGTLQSQ
AKSFVDFQHESRMTKIRAVLDQETWVEVDVPDEFQAIVSSLFDSEAIVSGSKDNAESNMT
ESYSNEGSQVGSVAQNEPTDSSNTTAVNAAQGKAEVIERKKSDAVTSSQSNNSNAIRGKN
ATQTLEYGGVSYHMVNCGLILLKMLSEYIDMNHLLPALSLEVVHRVVEILKFFNTRTCQL
VLGAGAMQVSGLKSITSKHLALASQVISFIYAIIPELRQILFLKVPEPRKSLLLSEFDRV
AQDYKVHRDEIHTKLVQIMRERLLVHLRGLPQIVESWNRPEDADPQPSQFARSLTKEVGF
LQRVLSRTLHEVDVQAIFRQVVVIFHSQISDAFSRLEIGTPQAKDRLHRDVTHILGCIRS
LPSDNSNNSATPNWGQLDEFLAQRFGAEAS
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggatctacagccttccccatcgggaaggtcatcgacagttggtcggatctcttcattt
tccgtcgctgattcgggtggccaaacgctttcttcggtccttaacaaccctcatgctggc
aaattggaagcttcttggggttggtggtcggtcgcgccgcctgaatttgctcctttgacg
tccaccaaagcggcttgcgaccttacccgatccgacttccaatcatacgtctcttccatc
tccgattcctattatcgattcgaggatattaggaatcacaccaccaaggagcagactctc
gatgtcgataacattggggaagcccttgtagcttgtttaagggaggttcccgccctttat
tttaaggaagatttcgcgctcgaagatgggggtaccttccgggcagcctgcccttttact
gatgtttctgaaaacatcatgcttcaggagaaattgtcccattacttggatgttgtggag
cttcatttggtgaaggagatttcgttgcgctccaattctttcttcgaagcgcaagggcag
ttgcaggacttgaatgttaagattgtggaaggatgcaatcggattcgtgatttgaaggaa
actattcggctcgtagacactgatttggttgactctgctaggcagattcaggagttgaat
gccactaggaccaatttgttggctctccaacataaattgaagcttattctatctgttaac
caagccttatccgctcttaaattgcttgttgcatcttcagagtgtgctggagctttggat
attatcgatgatctgcaacacttactggatggggatgagctttctggtttacattgcttt
cgtcatcttcgagatcatgtagtcacttctatagattccataaacagtattctttcagca
gaatttatgcgtgcttcaatacatgataagggggataaagattcagttatattgttgaaa
gcaaaagccagggcatccatttccttgaatggcgaggatgttggagttaacttggatgag
gaagaaaccaccaattttcgggatcgtcttctgcctcttattattggtttgcttcgaact
gccaagctcccatttgtcctaaggacatatcatgatacacttactgctgatatgaaaact
gctattaagactgctgttgcagagctgcttccggttctggtgggccaacctccggaatct
gatatgggtgcagagcacactgtcgatgcagatggtggaggcttatcacttgctagcaaa
ttgaggagtttgtcatctggaagctttgtccaacttctggctgctattttcaagattgta
caggcacatttagtccgggcagctgaagtaaaaagggccattgagtgggtaatgtgcaac
cttgatggtcattatgctgctgattcagtcgctgctgcaattgcacttggtgccatggtt
gcagaatcttctcaagagagtaatggtcaaggtggtgcacttcctctgagtgcttcttta
aggagtacatccaaggttctttcatccccagggaaaggaagtgatgcgataagcccctca
aatttatcaaagaatttcagggcggatgttctgagagaaaatgctgaagcggtctttgca
gcttgtgatgctgctcatggaagatgggcaaagctacttggcgttcgtgctcttcttcat
cctaagctaagattgcaagactttctgagcatatataatatcactcaggagtttataact
tctacagagaaggttggtggaaggttgggatatagcatcaggggaacactgcagtcacag
gctaaatcctttgttgatttccagcatgaatctcgaatgacaaaaatacgagcagtgctt
gatcaagagacatgggtagaagtagatgttcctgatgaatttcaggcaattgtttcttca
ctgtttgattctgaagcaatagtttctggaagcaaggataatgctgaaagtaatatgaca
gaaagctacagcaatgagggttcacaagtaggttctgtggcgcagaatgaaccaactgat
tctagtaacacaactgcggtaaatgctgcccaagggaaggctgaggtgattgagagaaag
aaatctgatgcagtaacttcatctcagagtaataacagtaatgcaatacgtggaaaaaat
gctactcaaacacttgaatatggcggtgttagttatcacatggttaactgtggcttaata
ttgctgaaaatgctgtcagagtacattgacatgaatcatcttctgccagcactatccttg
gaggtggttcatcgtgttgtggagattctaaaatttttcaacacgagaacatgccaactt
gttttaggtgctggagccatgcaggtttctggtttgaagtccattacttctaaacacttg
gccttggcaagtcaagtcattagtttcatatatgctatcattcctgaattgaggcaaatc
ctgttcctcaaagttcctgaacctcggaagtcacttctgctgtcagagtttgatcgagtt
gcacaggattataaggttcaccgggatgaaattcatacaaagcttgttcagataatgaga
gagaggttgttggttcatctgcgtggactaccccagattgttgagagctggaatagacca
gaagatgctgacccacagcccagtcaatttgctaggtctctcactaaggaagttgggttc
ctccaacgagttttatctcgtacattgcatgaagtagacgttcaagcaattttcaggcaa
gttgttgtaatcttccattcacaaatttcagacgcattttcacgcttagagatcggcact
ccccaggcaaaagatagactgcaccgcgatgttacacacattcttggatgcattcgatca
ttgccttctgataattcgaataattctgctaccccaaactgggggcaactggatgagttc
ttagcacaaaggttcggggccgaagccagttga
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