Gossypium arboreum (tree cotton): 128288441
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Entry
128288441 CDS
T05776
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase subunit beta-like
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
128288441
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gab03021
]
128288441
03400 DNA repair and recombination proteins [BR:
gab03400
]
128288441
Enzymes [BR:
gab01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
128288441
Transcription machinery [BR:
gab03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
128288441
DNA repair and recombination proteins [BR:
gab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
128288441
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Atg11_middle
Motif
Other DBs
NCBI-GeneID:
128288441
NCBI-ProteinID:
XP_052880825
LinkDB
All DBs
Position
Unknown
AA seq
1070 aa
AA seq
DB search
MLGDENGEMSTIPGLNQIQFEGFCGFMDRGLTEELYKFPKIEDTEQEIEFQLFVETYQLV
EPLIKERDAVYESLTYSSELYVSAGLIWKTSKDMQEQTIFIGNIPLMNSLGTSIVNGIYR
IVINQILQSPGIYYRSELDHNGISVYTGTIISDWGGRLELEIDRKARIWARVSRKQKISI
LVLSSAMGSNLREILENVCYPEIFLSFLTDKEKKKIGSKENAILEFYQQFSCVGGDPVFS
ESLCKELQKKFFQQRCELGRIGRRNMNQRLNLNIPQNNTFLLPRDILAAADRLIGMKFGM
GTLDDMNHLKNKRIRSVADLLQDQFGLALVRLENVVRGTICGAIRHKLIPTPQNLVTSTP
LTTTYESFFGLHPLSQVLDRTNPLTQIVHGRKLSYLGPGGLTGRTANFRIRDIHPSHYGR
ICPIDTSEGINVGLIGSLAIHARIGHWGSLESPFYKIFERSKKAQMLYLSPSRDEYYMVA
AGNSLALNQGIQEEQVVPARYRQEFLTIAWEQVHLRSIFPFQYFSIGASLIPFIEHNDAN
RALMSSNMQRQAVPLSRSEKCIVXTGLERQVALDSGVPAIADHEGKIISTDTDKIILSGN
GDALGIPLVMYQRSNKNTCMHQTARVRRGKCIKKGQILADGAATVGGELALGKNVLVAYM
PWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTHVTSQGPERITNEIPHLEAHLLRNL
DXNGIVMLGSWVETGDILVGKLTPQVAKESSYAPEDRLLRAILGIQVSTSKETCLKLPIG
GRGRVIDVRWVQKKGGSSYNPETIRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMP
YLQDGRPVDMVFNPLGVPSRMNVGQLFECSLGLAGXLLDRHYRIAPFDERYEQEASRKLV
FSELYQASKQTANPWVFEPEYPGKSRIFDGRTGGPFEQPVIIGKPYILKLIHQVDDKIHG
RSSGHYALVTQQPLRGRSKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIRARQEVL
GTTIIGGTIPKPEDAPESFRLLVRELRSLALELNHFLVSEKNFQINRKEA
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgctcggggatgaaaatggggaaatgtctacaatacctgggttgaatcagatacaattt
gaaggattttgtgggttcatggatcggggcttaacagaagaactttataagtttccaaaa
attgaagatacagagcaagaaattgaatttcaattatttgtggaaacatatcaattggtg
gaaccgttgataaaagaaagggatgctgtatatgaatcactcacatattcttctgaatta
tatgtatccgcaggattaatttggaaaaccagtaaggatatgcaagaacaaacaattttt
attggaaacattcctttaatgaactccctcggaacttctatagtaaatggaatatacaga
attgtgatcaatcaaatattgcaaagccccggtatctattatcgatcagaattggatcat
aacggaatttcggtctatactggtaccataatatcagattggggagggaggttagaatta
gagattgatagaaaagcaaggatatgggctcgtgtaagtaggaaacagaaaatatctatt
ctagttctatcatcagctatgggttcgaatctaagagaaattctagagaatgtttgctac
cctgagattttcttgtctttcctgaccgataaggaaaaaaaaaaaattgggtcaaaagaa
aatgccattttggagttttatcaacaattttcttgtgtaggcggggatccggtattttct
gaatccttgtgtaaggaattacaaaagaaattctttcagcaaagatgtgaattaggaagg
attggtcgacgaaatatgaaccagagattgaatcttaatatacctcagaacaatacattt
ttgttaccgcgagatatattggcagctgcggatcgtttgattggaatgaaatttggaatg
ggtacacttgacgatatgaatcatttgaaaaataagcgtattcgttctgtagcggatctc
ttacaagatcaattcggattggctctggttcgtttagaaaatgtagttagaggaactata
tgcggagcaattaggcataaattgataccgactcctcagaatttggtaacttcgactcca
ttaacaaccacttatgaatcctttttcggattacacccattgtctcaagttttggatcga
acaaatccattgacacaaatagtgcatgggagaaaattgagttatttgggccccggagga
ttgaccgggcgaactgctaattttcggatacgagatatccatcctagtcactatggacgc
atttgcccaattgacacgtctgaagggatcaatgttggacttatcggatccttagcaatt
catgccaggattggtcattgggggtctctagaaagtccattttataaaatctttgagaga
tcaaaaaaagcacagatgctttatttatccccaagtcgagatgaatattatatggtagcg
gcaggaaattctttggccttgaatcagggtattcaggaagaacaggttgttccggctcga
taccgccaagaattcctgactattgcatgggaacaagttcatcttcgaagtatttttcct
tttcaatatttttctattggagcttccctcattccttttatcgagcataatgacgcgaat
cgggctttaatgagttctaatatgcaacgccaagcagttccgctttctcgttccgagaag
tgcattgttngaactgggttggaacgccaagtggctctagattcaggagttcccgctata
gccgatcacgagggaaagatcatttccaccgatactgacaagattattttatcgggcaat
ggagatgctctaggcattccattagttatgtatcaacgttccaacaaaaatacttgtatg
catcaaactgcccgggttcggcggggtaaatgcattaaaaaggggcaaattttagcggac
ggtgccgctacggttggtggcgaactcgctttgggcaaaaacgtactagtagcttatatg
ccatgggaaggttacaattttgaggatgcggtactcattagcgagcgtctagtatatgaa
gatatttatacttcttttcacatacgaaaatatgaaattcagactcatgtgacaagccaa
ggtcctgaaagaatcactaacgaaataccgcacctagaagcccatttactccgcaattta
gacnaaaatggaattgtgatgctgggatcttgggtggagacaggcgatattttagtaggt
aaattaacgcctcaggtggcgaaagaatcatcgtatgctccagaagatagattattacgg
gccatacttgggattcaggtatccacttcaaaggaaacctgtctaaaattacctataggt
gggaggggtcgagtcatcgatgtgagatgggtccagaaaaaagggggttctagttataat
ccggaaacgattcgtgtctatatttcacagaaacgcgaaatcaaagtaggcgataaagta
gccggaaggcatggaaataaagggatcatttcaaaaattttacctagacaggatatgcct
tatttgcaagacggaagacctgttgatatggtcttcaacccattaggagtaccttcacga
atgaatgtaggacagctatttgaatgctcgcttgggttagcaggangtctactagataga
cattatcgaatagcaccatttgatgagagatatgaacaagaggcttcgagaaaactagtg
ttttccgaattatatcaagccagtaagcaaacagcgaatccatgggtatttgaacccgaa
tatccaggaaaaagccgaatatttgatggaagaacgggaggcccctttgagcaacctgtt
ataataggaaaaccttatatcttgaaattaattcatcaagttgatgataaaatacatggg
cgttccagtggacattatgcacttgttacacaacaaccacttagaggaaggtccaagcaa
ggaggacaacgggtaggagaaatggaggtttgggctctagagggatttggtgttgctcat
attttacaagaaatgcttacttataaatctgatcatattagagctcgccaagaagtactt
gggactacgatcattggaggaacaatacctaaacccgaagatgctccagaatcttttcga
ttgctcgtccgagaattacgatctttggctctggaactgaatcatttccttgtatctgag
aagaacttccagattaataggaaggaagcttaa
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integrated database retrieval system
