Gymnodraco acuticeps: 117535720
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Entry
117535720 CDS
T09661
Symbol
col9a1a
Name
(RefSeq) LOW QUALITY PROTEIN: collagen, type IX, alpha 1a
KO
K08131
collagen type IX alpha
Organism
gacu
Gymnodraco acuticeps
Pathway
gacu04510
Focal adhesion
gacu04512
ECM-receptor interaction
gacu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gacu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117535720 (col9a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117535720 (col9a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117535720 (col9a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
gacu00535
]
117535720 (col9a1a)
Proteoglycans [BR:
gacu00535
]
Extracellular matrix (ECM) proteoglycans
Others
117535720 (col9a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
117535720
NCBI-ProteinID:
XP_034056133
UniProt:
A0A6P8SYN9
LinkDB
All DBs
Position
Unknown
AA seq
687 aa
AA seq
DB search
MSLSRTYRESLLVIYWQIVLICSAQRGPVGPRGSLGPPGVAGVPGVDAIDGDRGEDNTVT
GGPGPDGDNGKDGAAGAAGLPGADGLVGPSGDPGALGPNGPKGDAGAQGPPGELGVGPDG
LDGIPGTDGLPGELGKVGPGGARGKRGQVGLSGAAGPRGLPGVYNGEDLCPNACPSGLHG
HSGLPGMKGHKGIKGESGEPGRQGHKGEEGEQGTLGEVGSQGLPGPGGARGLQGIFGSKG
DRGLRGKSGDGGPQGIQGAPGDVGQRGVIGESGPAGVQGERGPSGIRGVPGLKGEAGLAG
PDGREGIPGLPAIKGIPGKNGGPGDAGLQGLPGLPGSYGQKGVSGVVGTAGDPGVLGMMG
SPGKQGERGDQGGVGAVGPRGGPGARGVRGHGGPLGAAGVRGGKGDPGLPGLPGPAGYLG
QKGERGAVGVDGPQGDQGAAGAEGTPGTVGELGEQGEAGEKGSTGQPGETGNKGPEGGRG
QPGKDGKEGQSGPRGMQGDMGVPGLTGTQGPAGKTPTDTHIRQVCMRVMQDQLAQLAASL
SRPESGDSGLPGPPGPPGPQGVSGENGFPGHSGSRGLPGLKGPAGLLGRKGPKGDVGDRG
DRGPVLRGPKGAPGATGQQGNSGRPAYGKDGREGMRGPRGVPGMLGVPGPPGPAGVTGWC
ESSQCILPMVAAPVSAKDSSMKGPNEM
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgtctctctccaggacctaccgagagtctctgctggtgatttactggcaaatcgtgctg
atctgctcggctcagaggggcccggtcggtccccgaggctccctggggccgcccggagta
gcaggcgtacccggagtggacgccattgatggcgacagaggagaagacaacacagtgacc
ggcggaccaggcccagacggagataatggaaaagacggagctgcaggagctgcaggactc
ccaggcgcagacggacttgttggaccttctggagatccgggagcactcgggccaaacgga
ccaaaaggagatgctggagctcaagggcctcctggagagcttggtgtaggacctgatggg
ctggatggtattccaggtacagatgggcttccaggtgaattgggcaaagttggaccaggc
ggagcgagaggcaagagaggtcaagttggtctttctggtgctgctgggccgcggggtctt
ccaggcgtgtataatggagaggacctgtgtcccaacgcctgcccttctggactccacgga
cactctggactacccggcatgaaaggccacaaaggaattaaaggtgaatctggagagccc
gggagacaaggacacaagggagaggagggcgaacaaggaacgttgggagaagtcggatct
caaggactaccaggtcccggtggagcaagaggcctccaaggaatatttggctccaaaggc
gacaggggtcttcgtggaaaatcaggagatggtggtcctcagggaatccagggagcccca
ggcgatgtgggtcaaagaggagtcatcggtgagagcgggccagcaggagttcagggtgaa
cgtggtccatctggaatcagaggagtgcccgggctgaaaggagaggctggtcttgctggt
ccagatggccgagaggggattcctggtcttccagcaatcaagggtattccagggaaaaat
gggggtccaggtgatgccggcctacaaggacttcctggtttgccaggctcttatggccaa
aaaggagtcagtggtgtagtgggtaccgcaggtgatccaggtgttttaggaatgatgggg
tctccagggaaacaaggggagcgtggagaccagggaggagttggagcagtcggacccaga
ggaggaccaggtgcacgtggagtgagagggcatggagggcctctaggagcagcaggagtg
aggggaggtaaaggggaccccggcctgcccggacttcctggtcctgctgggtatcttggg
cagaagggcgagaggggtgcagttggtgttgatggtccacagggagatcagggagctgca
ggtgctgaaggaactccaggaactgttggagaactgggagaacaaggagaagcaggagag
aaaggatcgacaggccaaccaggagaaacaggaaacaaaggaccagagggcggccgagga
cagccgggaaaagatggaaaagagggtcaatccggaccacgaggcatgcagggagacatg
ggagtaccgggactaacggggactcagggaccagcggggaaaactccaacagatactcac
atcagacaggtctgcatgagggtaatgcaagatcagctggcccagctagcagccagtctg
agcagacctgagtcaggagactcaggtctgcccggcccccctggcccccctggacctcaa
ggagtcagcggagagaacggtttccccggacacagcgggtcccgaggactgcccggtctg
aagggtccagctggactactgggtcgaaaaggacccaaaggtgacgtgggagaccgaggg
gacagaggacccgtattgagaggacccaaaggagcacccggagcaaccggtcaacaaggt
aattcggggcgaccggcgtacggtaaggacggccgtgaggggatgagaggaccccgcggt
gttcccggtatgttgggcgttcccggtcctcctggtcctgccggtgttaccggatggtgc
gagtcgtctcagtgcatcctgcccatggtggcagcgcctgtttctgcaaaggactccagc
atgaagggtcccaatgaaatgtga
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