Gymnodraco acuticeps: 117539639
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Entry
117539639 CDS
T09661
Symbol
cnot1
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
gacu
Gymnodraco acuticeps
Pathway
gacu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gacu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117539639 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gacu03019
]
117539639 (cnot1)
Messenger RNA biogenesis [BR:
gacu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117539639 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117539639 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
117539639
NCBI-ProteinID:
XP_034061772
UniProt:
A0A6P8U332
LinkDB
All DBs
Position
Unknown
AA seq
2403 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNVIATLCYAVDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNADLRGFASQFIKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGLGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYGFCASLDECRNIIVQYGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKNDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHAGFIIRDSKGLHIVVYGIQRGLGMETFPVDLIYRPWKHAEGQLSFIQHSLMSPEVFS
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQMDSLSGMGSL
NLGGTTTSHTQSMQGFPTSLSSAFSNPQSPAKAFPPLTNPNPSTPFGGIGSIGSIGSLSS
QLPGMDSGPLGTGIGSSIGSSLGMPTVNTDPFGTRKMSTPGLNPPTFQQTDLSQVWPEAN
QHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFE
EYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAA
LDRFKNRLKDYPQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLAL
AQVQSQQPGVPKAPQPGQPSTLVTTTTTTTTVAKTPTITRPTPSTFKKDVPPSINTTNID
TLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKDEFMPWVSQYLVM
KRVSIEPNFHGLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLG
HWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVFRPQN
PWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGTLLKDKDKLKSLEEQL
SAPKKEAKPPEEMLPVSTGGFLDFNQMPVLRPTGDFVPFAAPPSTPAVTTTPCTTTGPPT
PQFSYHDINVYALAGLAPHININVNISLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIK
IAMTTCEQIIRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFA
AALRAPTPQQREMMEEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHAR
QEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGF
LAQPMKQQAWATDDVAQIYDKCMADLEQHLHAIPPALAMNPLTQALRSLLEAVALARNSR
DGIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRC
LIECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDE
RSVSHVTEADLFHTIETLMRTCAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMH
SGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDD
LITRFFRLCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEA
TNTVTKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINF
QTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFK
YLAPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLIL
SAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFL
SELRSNLQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQN
LAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLI
VNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGT
GAS
NT seq
7212 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctttcgctggctttgtctcaaatcagctatctagtggacaattta
actaagaaaaactatcgagccagccagcaagaaatacagcatattgtgaatcgtcacggt
cctgaggcagacaggcatctacttcgctgtctcttctctcatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacagtttctgatccaggagtgtgtgtcg
ctgatatcgaagccaaacgttattgctactctgtgttacgccgttgacaatccccttcat
taccagaagagtttgaagccatcggcccacctattcactcaactgagtaaagttcttaag
ctcagcaaagtccaagaggtgatatttggacttgctttgctcaactccagcaacgcagac
cttcgtggttttgcctcgcagttcatcaagcagaaactccccgacctcctgcggtcatac
gttgacgcggatctcggaggaaaccaggaaggtggctttcaggacattgccatcgaggtc
ttgcatttactgctgtcccatctactctttggccaaaaaggagccagtgggttagggcag
gagcagattgacgccttcctgaagacactctgccgagatttcccccaggagcgctgccct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattctcatggacaggatcctg
ccagactcgggggagttagctaagaccatgatggagagttctctcgcagaattcatgcaa
gaagtcggctatggcttctgtgctagtctggatgagtgcagaaacataatcgtccagtat
ggggtgagagaggtgacagccagccaggtggccagagtcctgggcatgatggctcgtacc
cactctggcctgactgatggtatcccactacagtccatctctgctccaggtagtggtatc
tggagcgatggcaaggataagaacgacggctcgcaggcacacacgtggaatgtggaggtt
ctcatcgacgttgtgaaggaagtgaatcctaaccttaacttcaaagaggtgacctacgag
ctggaccatgcaggatttataatccgggacagtaaaggcctgcatattgtggtgtacggc
attcagagggggttgggcatggagacgtttcctgttgatctgatctatcgaccatggaaa
cacgcagaaggacagctgtcattcattcagcactctctgatgagcccagaagtgttttcc
tttgccgactacccttgccacactgtggccatagacatccttaaggccccaccggaggat
gacaacagagagattgccacctggaaaagtctggacctggtggagagcctgctgaggctg
tcagaggtgggccagtacgagcaggtgaagcagctgttcagctttcccatcaagcactgc
ccagacatgttggtgctggcattgctgcagatctccacttcctggcacacactgcgccat
gagctcatctccaccctgatgcctatcttcctgggcaaccaccctaactctgccatcatc
ctgcactacgcctggcacggacagggacagtctccctctatccgtcagcttattatgcat
tcaatggcagagtggtacatgaggggggagcagtatgaccaggccaagctgtcacgcatc
cttgatgtggcccaggacttgaagtctctgtcgatgttgctgaatggtactccatttgcc
tttgttattgaccttgctgcacttgcttctcgtcgtgaatacctcaaacttgataaatgg
ctgactgacaaaatccgagagcacggggaaccttttatccaggcatgtgtgacattcctg
aagaggcgctgcccatccattatggggggtctggcaccagacaaggaccagcccaaaagc
gcccagctgccccctgagaccttagccaccatgctggcctgcctgcagtcctgtgcgggg
agtgtgtcccaggagctgtcagaaactatcctaaccatggttgccaactgcagcaatgta
atgaataaagcccggcaacctccaccgggtgtgatgccaaagggacgggcccccagcacc
agcagcctggatgccatctcccctgtacagatggactctctctccggcatggggtccctg
aacctggggggcacaaccacctcccacactcagagcatgcagggcttcccaacctcactg
agctcagctttcagtaatccccagtccccggctaaagccttcccccccctcaccaacccc
aaccccagtacaccatttgggggcattgggagcattgggagcattgggagcctgtcctcg
cagcttcctggcatggactctggtcccctgggcacaggcattggctccagtattggctct
agtctggggatgccgactgtgaacaccgacccatttggcaccaggaagatgagcacacca
ggcctgaacccaccaacctttcagcagactgacctttctcaggtttggcccgaggcgaac
cagcactttagtaaagagattgacgatgaagcaaacagttacttccagcgcatctacaac
cacccacctcatccaactatgtccgtggatgaagtactggaaatgctgcagaggttcaag
gattcaaccatcaagagggagcgagaggtgttcaactgtatgcttcggaacttgtttgag
gagtacagattcttcccccagtacccagacaaggagctgcacatcactgcctgccttttt
ggtggcattatcgagaagggtctcgtcacctacatggccctgggcttggccctccgatat
gttcttgaagccttaagaaaaccctttggatccaaaatgtattactttggaattgccgcc
ctagataggtttaaaaacagactaaaggactatcctcaatattgtcaacatctggcttca
attgcccacttcttgcaattcccccaccatttacaagagtatatcgagtatgggcaacag
tcacgggaccctccggtgaagatgcagggctccatcaccacgcctggaagtctggcactg
gcacaggtccagtcgcagcaacccggggtcccaaaagctccacagccaggccagcccagc
actctggtcaccaccaccaccactacaaccactgtagccaagacaccgaccatcacaaga
cccacacccagcaccttcaagaaggatgtgccgccctctataaacacaaccaacattgac
accctgctggtggccaccgaccaaacggaacgtattgtagagcctcccgagaatgtccag
gagaagattgcgttcatattcaacaacctctctcagtccaacatgacacaaaaggttgaa
gagttgaaggagactgtgaaggatgagtttatgccctgggtgtctcagtacctggtgatg
aagcgtgtcagcatcgagcccaacttccacggcctctactccaacttcctggacactctc
aagaacccggagtttgtcaagatggtcctcaatgagacctacagaaacatcaaggttctg
ttgacatctgacaaggcagctgccaacttctctgatcgctcgctgctgaagaacctgggc
cactggttgggcatgatcacactggccaaaaacaagcctatcctatacacagatttggag
gtgaagtctctgctactggaagcgtatgtgaaaggccagcaggagctcctttatgtggtt
ccatttgtggccaaagttttggagtccagtctgcgaagcatggtcttcaggccccagaac
ccctggaccatggccatcatgaatgttcttgcagagctgcatcaagaacatgacctcaag
ctgaatctgaagtttgagattgaagttctgtgtaagaacttgtctttggacatcaacgac
ctaaagccagggaccctgctgaaagacaaagacaagctgaagagtctggaggaacagctg
tctgcaccaaagaaagaggccaagcctccggaagagatgctgccagtttctaccggtggt
tttctggactttaatcaaatgcctgttttgcgaccaacaggggactttgttcctttcgcc
gcccccccctcaactccagctgtcactaccaccccttgcacaaccaccggcccccccacc
cctcagtttagttaccacgacatcaatgtgtatgccttggcaggcctggctccacacatc
aatataaatgtcaacatctcgctgctgcaggcccatccccagctgaagcagtgtgtacgg
cagtcggtggagcgtgctgttcaggagctggtgcacccggtggttgaccgctctatcaaa
atagccatgacgacctgtgagcagatcatccggaaggactttgctttggattcggaggag
tcccgcatgcgtgtggctgcccaccatatgatgaggaacctgactgctggcatggccatg
atcacctgccgcgagcctctgctcatgagcatcgccaccaaccttaagaacagctttgct
gctgcgttaagggcaccaaccccacaacagagggaaatgatggaagaggctgcagccagg
attgcacaagacaactgtgaattagcatgctgcttcattcagaaaacagctgtggagaag
gctggccctgaaatggacaagagactagccacggagtttgagctgaggaagcatgcacgc
caagaaggacggcggtactgtgatcctgttgttctgacgtaccaggctgaacgcatgcca
gaacagatcagactcaaggtgggaggcgtggacccgaagcagctggccgtgtatgaggag
tttgccaggaacgttccaggtttcttacccagtaatgatctctcccaacccactggcttc
ttggctcagcccatgaagcagcaagcgtgggccacggatgatgtagctcagatctacgac
aagtgcatggcagacttggagcaacaccttcatgccatccctccggccctcgccatgaac
cccctgacccaggctctgcgcagcctgctggaagctgtggccctggccagaaactccagg
gatggcatcgctgcactcggccttctgcagaaggctgttgagggtctcctggatgctacc
agtggagctgatgcagacttgctgctccgctacagagagtgccacctgctggtgctcaaa
gccctgcaggacggacgtgcctatggaccacagtggtgcaataagcagatcaccagatgt
ctgattgaatgccgcgatgagtacaaatacaacgtggaggcggtggagcttttgatcagg
aaccatcttgtgaatatgcagcagtatgacctgcacctggcacagtcgatggaaaacggc
ctgcactacatggcagtagcgtttgccatgcagttggtgaagctgctgctggtagatgag
cgcagcgtcagccatgtgacggaggcggacctcttccacacaattgagactttgatgagg
acctgtgcacactccagagccaacgcacctgagggccttccccagctgatggatgtagtt
cgctccaactatgaggccatgattgaccgggcccacggaggaccgaacttcatgatgcac
tctgggatctcccaggcttcagagtatgacgaccctccgggcctgagggagaaggccgag
tacctcctgagggagtgggtcaacctgtaccactcagcggctgctggcagggacagcacc
aaagctttctctgcttttgttggacagatgcaccagcagggcatcctgaagacggatgac
ctgatcacgaggttcttccggctttgcacagaaatgtgcgtggagataagttaccgagca
caggctgagcagcagcacaacccagcagccagcgcagccatcatcagagcgaagtgttac
cacaacctggacgccttcgtcaggctcatcgccctgctggtcaaacactccggagaggcc
accaacacagtgaccaagatcaacctcctcaacaaggtgctgggtatcgtagtcggggtc
ctgattcaggaccatgatgtccgtcagacagaattccagcagctgccgtaccaccgcatt
ttcatcatgctgttattggagctcaacgctccagaacatgttctggagaccatcaacttt
cagacactcacggccttctgcaataccttccacatcctgagaccaaccaaagcgcccggc
tttgtgtacgcctggctggaactcatctcccaccgcatcttcatcgccaggatgctagct
cacacaccgcagcagaagggatggcccatgtacgcacagctgctgattgatctcttcaag
tacctggcccccttcctgaggaatgtagagctcaacaaacctatgcaaatcctctacaag
ggcacactgcgagtgctactggtcctgctgcacgacttcccagagttcctgtgtgactac
cattatggtttctgtgatgttatcccacccaactgcatccagctccgcaacctcatcctc
agtgccttcccacgcaacatgaggctcccagaccctttcacacccaacctcaaggtggac
atgctgagtgagatcaacatcgcgccccgtatcctcaccaacttcacaggcgttatgcct
tcccagttcaagaaggacctggactcgtacctgaagactcggtcaccagtcaccttcttg
tctgagctgcgcagcaacctgcaggtgtctaacgagccaggaaaccgctacaacatccag
ctgatcaacgcgctggtgttgtatgtgggcacacaggcaatcgctcacatccacaacaag
ggcagcaccccctccatgagcaccatcacccactctgcacacatggacatcttccagaac
ctggccgtggacctggacactgaggggcgttacctgttcctgaacgcgatcgccaatcag
ctgcgttacccaaacagccacacccactacttcagctgcaccatgctctacctgttcgct
gaggccaacaccgaggccatccaggagcagatcaccagggttctgttggagaggctgata
gtgaacaggcctcacccatgggggctcctcatcaccttcatcgagctgatcaagaaccct
gccttcaagttctggagccacgactttgtgcactgtgcccccgagattgaaaagctgttc
cagtcagtagcccagtgctgcatgggacagaagcaggcccagcaggtgatggagggcacc
ggtgccagctag
DBGET
integrated database retrieval system
