Gambusia affinis (western mosquitofish): 122829354
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Entry
122829354 CDS
T07758
Symbol
col9a3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf04510
Focal adhesion
gaf04512
ECM-receptor interaction
gaf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122829354 (col9a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122829354 (col9a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122829354 (col9a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
gaf00535
]
122829354 (col9a3)
Proteoglycans [BR:
gaf00535
]
Extracellular matrix (ECM) proteoglycans
Others
122829354 (col9a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
122829354
NCBI-ProteinID:
XP_043969776
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Position
LG01:32062467..32080739
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AA seq
678 aa
AA seq
DB search
MTVFSALWVLFLCQLLSSSSAQRTGPRGIQGPQGPPGQPGRDGTDGKPGPPGLPGKAGPK
GKAGIPGGPGKPGLPGLPGIDGLTGPDGPAGRDGPPGEAGEAGPPGPPGPPGRGRPGAPG
LPGTNGLPGGVGPQGAAGLEGLPGLPGPPGPDGPPGLPGSLQDLNGDLLCPAICPPGPPG
PPGMPGFKGHTGHKGDKGEPGKNGEKGDSGPPGQPGVPGTVGLQGPRGLRGLQGSMGSAG
DRGFPGFRGKPGIAGIIGKTGDVGEKGPQGFKGPKGEIGKIGPKGAVGGAGPKGEPGIPG
RDGKDGTPGLDGEKGDPGRHGVVGEKGPNGLPGLPGKAGAKGSKGQIGDPGKNGEQGPSG
EPGIPGEIGVPGNRGIAGPRGVAGGIGPVGNSGPLGVKGFQGVKGALGDPGLPGPTGLRG
EFGDRGPVGASGAKGDIGVAGSDGLPGENGEPGPFGPVGQKGESGKRGELGPKGVTGPQG
EIGARGPPGKPGPMGFQGEQGLPGIAGKTGVPGKLASEQHIRELCGSMIDDQIAQLAANL
RRPLAPGTVGRPGPAGPPGKQGVAGSVGHPGTRGPPGYRGLPGELGDPGPRGDVGEAGDK
GPVGKAIDGPPGDQGHQGLPGVRGIVKDGRDGSPGDPGEPGESGRAGRTGHQGPPGICDT
TACQGTSPAGKSSNPKNN
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgacggtgttctcagctctttgggtgctcttcctgtgccagctgctgtcgtcctcctct
gcccagaggactggccccagaggaatccaagggccacaaggaccgccaggacaaccagga
agggacggcactgatgggaaaccgggacctcctgggttgccagggaaagctggcccaaaa
gggaaagcaggaataccaggaggaccaggaaaaccaggtctgccaggacttccaggaatt
gatggcttgaccggtcctgatggtcctgctggcagagacggacccccaggggaagcaggt
gaagctggacctccgggaccacctggacctcctggcagggggagaccaggagccccagga
ttacctgggaccaatgggttgccgggcggagtcggaccccagggagcagcaggtctagag
ggtcttccaggacttccaggacctcctggccctgatggacccccggggcttcctggctct
cttcaagatcttaatggtgaccttctgtgtcctgctatctgtcctcctggtccccccggc
ccacccgggatgccaggattcaagggacacactggacacaaaggagacaagggagagcct
ggaaaaaatggagagaagggggattctggtccaccgggacagccgggtgttccaggaact
gttggtctgcagggccctcgtggtctgaggggtctacaaggctcaatgggatctgcaggg
gacagaggtttcccaggtttcagaggcaaacctggtatagctggaattatcggaaagaca
ggcgacgttggggaaaaaggaccgcaggggttcaagggacctaaaggagagattggcaaa
attggtcccaaaggagcagtgggtggagcaggacccaaaggggagcctggtatacctgga
cgagatgggaaagatggaacgccggggttggatggcgagaagggtgatcctggacgccat
ggagtagttggagagaaaggaccaaatggacttcctggtttgcctggaaaagctggagct
aaggggtcaaaaggacaaattggtgatccagggaagaatggggagcaaggaccctctgga
gagccaggtattcctggtgaaattggcgttccaggaaacagggggatagcaggtcccaga
ggagtggctggaggaatcggaccagttggcaattctgggcctctgggagtaaaaggcttc
cagggcgtcaaaggagccttgggcgacccaggccttccaggtccaacaggactccgtggg
gagtttggtgacagaggtccagttggagcttctggagcaaagggagacataggcgtggca
ggaagtgatggcttaccaggagaaaatggagaacctggtccgtttgggccagttggacag
aaaggagagtcaggaaagagaggtgaactggggcctaaaggtgtgacaggtccacaaggc
gagatcggggccagggggcctccaggaaaaccgggaccgatgggtttccaaggggaacag
ggtctgccaggaatcgcaggaaagaccggtgtacctggtaaactagcaagtgagcagcac
atcagagagctgtgtggttccatgatcgatgaccagattgcacagctagcggccaacctg
cggaggcccctggccccaggaacagtgggccggcccggccccgcgggtcccccaggaaag
caaggggttgctggttcagttgggcatccagggacccgtggaccaccaggatacagaggc
ctgccaggagaacttggagatccaggtcccagaggtgatgttggtgaggcaggtgataag
ggacctgttggcaaagccattgatgggcctcctggagaccaaggacaccaaggtcttcct
ggagtacgtgggattgtcaaagatggccgtgatgggtctcctggagatccgggtgagcct
ggagagtctggcagggcaggtaggactgggcatcagggtcctccagggatctgtgataca
acagcctgccagggaacgtcaccagctgggaaatcctcaaaccccaaaaacaattaa
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