Gambusia affinis (western mosquitofish): 122832074
Help
Entry
122832074 CDS
T07758
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122832074 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaf03019
]
122832074 (ddx6)
03036 Chromosome and associated proteins [BR:
gaf03036
]
122832074 (ddx6)
Enzymes [BR:
gaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122832074 (ddx6)
Messenger RNA biogenesis [BR:
gaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122832074 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
122832074 (ddx6)
Chromosome and associated proteins [BR:
gaf03036
]
Eukaryotic type
Gene silencing
piRNA pathway
122832074 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SNF2-rel_dom
CMS1
ResIII
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
122832074
NCBI-ProteinID:
XP_043974380
LinkDB
All DBs
Position
LG06:5573870..5588462
Genome browser
AA seq
482 aa
AA seq
DB search
MSTTRTENPVILGLSNQNGQLRSSVKPGGAPGGGGGGPQPPQLNQMIKGAINGNSQSAPP
TNAVIKPGDDWKKNLKLPPKDMRMKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSP
IQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDCLQALVIVPTRELALQVS
QISIQVSKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVNRVQ
MIVLDEADKLLSQDFVVMMEEMLSFLPKQRQILLYSATFPLSVQKFMNAHLQKPYEINLM
EELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSC
FYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHR
IGRSGRFGHLGLAINLITYDDRFNLKAIEEQLGTEIKPIPGIIDKSLYVAEYHSESGEEG
KQ
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccaccaggacagagaacccagtgattttgggcttgtccaaccagaacggacag
ctgaggagctcggtgaaacctggaggggcaccaggcggaggtggaggaggtcctcaacct
ccgcagttaaaccagatgataaaaggagcaatcaacggcaattcccagtcagcccctcca
acaaacgctgttatcaagcctggagatgactggaagaagaatttgaaattgcccccaaag
gacatgaggatgaaaacttcggatgtgactgcaactaaaggcaatgagtttgaagattat
tgcctaaagagggagctacttatgggaatctttgagatgggctgggaaaagccatctcca
attcaggaggaaagcattcccatcgcactgtcaggaagagatattttggcccgagccaag
aacggcacaggaaagagcggagcctacctcattcccctgctggaacgcatcgacctgaag
aaagactgtttacaggctttggtcatcgtgcccaccagagaactggcactgcaggtcagc
caaataagcatccaggtcagtaaacacatgggcggcgtgaaggtcatggcgaccacaggg
gggacgaacctccgcgacgacatcatgaggctcgacgaaacggtacatgtggttattgca
acaccaggcagaattttagacctaatcaaaaaaggagtggccaaagtcaatcgggtccag
atgattgttctggatgaagccgacaagctcctgtctcaggactttgtggtcatgatggag
gagatgctgagcttcctgcccaaacagaggcagattttactttactccgccactttcccg
ctcagtgtgcagaagtttatgaacgcacatttgcaaaaaccttatgagatcaacctaatg
gaggagctaacgctgaagggagtgactcagtattatgcttatgtaacagaaaggcaaaag
gtccattgcctcaacaccttgttctccaggctccagatcaaccagtcgataatcttctgt
aactcctctcagagagtggagcttcttgccaagaagatttcccagcttggttattcatgt
ttctacattcatgccaagatgagacaggaacatcgcaaccgtgttttccatgactttaga
aatgggctgtgccgaaacctggtctgcactgacctcttcacgagaggaattgacattcaa
gctgtgaatgttgtgatcaactttgattttcctaaactgggagagacgtaccttcatcgt
attggaagatctggacgcttcggccatcttggtttggccatcaacctcatcacgtacgac
gaccgcttcaacctgaaggcgatcgaggagcagctggggacggagatcaagcccatcccc
ggcatcatcgacaagagcctgtacgtggccgaataccacagcgagagcggcgaggagggc
aagcagtga
DBGET
integrated database retrieval system
