Gambusia affinis (western mosquitofish): 122836104
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Entry
122836104 CDS
T07758
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122836104 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaf03019
]
122836104 (cnot1)
Messenger RNA biogenesis [BR:
gaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122836104 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122836104 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
122836104
NCBI-ProteinID:
XP_043981723
LinkDB
All DBs
Position
LG08:complement(2915833..2945345)
Genome browser
AA seq
2396 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNTDLRGFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIPIEV
LHLLLSHLLFGQKGTSGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDIPMDRIL
PDSGELAKTIMESSLADFIQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIPLQSISAPGSGIWSDGKDKNDGSQAHAWNVEVLIDIVKEVNPNLNFKEVTYE
LDHPGFLIRDSKGLQIVVYGIQRGLGMEVFPVDLIYRSWKHAEGQLSFIQYSLMNPEVFC
FADYPCHTVVIDLLKAPPEDDNREIATWKSLDLVESLLRLSELGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNATPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANRSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSACDKQTMD
TLTGISALSLGSTATSHTQSMQCFATSLSSALSNPLSPSKAFPPLPNPNPTTPFGVHSSI
SSQLPGMDSAISSSIGSSIGSSLGMSSVSTDPFGTRKMSTPVLNPPTFQQTDLSQVWPEA
NQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLF
EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIA
ALDRFKNRLKDYPQYCQHLASIGHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSITTPG
SVALAHAQAQSQQPPSLKAPQPGQPSTLATTTTTTTTTAAKTGTISRPTQSTFKKDMPPS
INTTNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPW
VSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDR
SLLKNLGHWLGMITLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRS
MVFRPQNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKEKL
KNLEEQLSAPKKEAKPPDEILPPPTTGDFVPFPAPSTTPAATTTTCTTTGPPTPQFSYHD
INVYALAGLAPHININVNIALLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCE
QIIRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPT
PQQREMMEEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYC
DPVVLTYQAERMPEQIRLKVGGVDSKQLAVYEEFARNIPGFLPSNDLSQPTGFLAQPMKQ
QAWATDDVAQIYDKCITDLEQHLHAISPALAMNPLTQGLRNLLEAVALARNSRDGIAALG
LLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDE
YKYNVEAVELLIRNHLVNMQQYDVHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVT
EADLFQTIEILMRTCAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQAS
EYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFR
LCTEMCVEISYRAQAEQQHNPAASVAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKI
NLLNKVLGIVVGVLIQDHDVRHTDFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFC
NTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLR
NVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNM
RLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNL
QVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDT
EGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPW
GLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTSAS
NT seq
7191 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctatctggtggacaattta
acgaagaaaaactacagagccagccagcaagaaatacagcatattgtaaatcgtcacggt
cctgaggcagacaggcatttactacgctgtctcttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacagtttctgattcaggagtgtgtgtcg
ctgatatcaaagccaaactttatctctactctctgctacgccatcgacaatcccctgcac
taccagaagagtttgaagccatccgcccacctgtttactcaactgagtaaagtacttaaa
ctcagcaaggttcaagaggtaatttttggccttgctctgcttaactccagcaacacagat
cttcggggatttgctgcacagttcatcaagcagaagcttcccgaccttctgaggtcatac
gttgacgcagatcttgggggaaaccaggaaggtggcttccaggacattcccatagaggtg
ttgcacctgctgctctcccatctactgtttggacagaagggaaccagtggggtagggcag
gagcagattgacgccttccttaagacactttgccgagatttcccccaagagcgctgtcct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattcccatggacaggatctta
ccagactctggggagttagctaagaccatcatggagagttctctcgcagacttcattcag
gaagttggttacggcttttgtgccagtcttgatgaatgcagaaacataatcctccagtat
ggggtgagagaggtgacagccagccaggtggccagggttctgggaatgatggcccggacg
cactccggcctgtctgacggcatcccactccagtccatttctgctccaggaagtggaatt
tggagtgatggtaaggacaagaacgacggctcacaggcacatgcgtggaatgttgaggtt
ctcattgacattgtcaaagaagtgaatcccaacctgaacttcaaagaggtgacgtatgaa
ctagaccaccccggatttctgatccgggacagcaagggcctgcagatcgtggtgtatggg
atccagcgggggctgggaatggaggtcttccctgtcgatctcatttaccgctcttggaaa
cacgcagagggacagctgtcgtttattcagtactcgctgatgaacccagaagtgttctgc
tttgctgactacccatgtcacactgtggtcattgacctccttaaagccccacctgaggat
gacaacagggagattgctacatggaaaagtctggacttggtggagagtctcctcagactc
tctgagctggggcaatacgaacaggtgaagcagctcttcagcttccccatcaagcattgc
ccggacatgttggtgttggctctactgcagatctccacctcctggcacacgttacgccat
gagctcatttccaccctcatgcccatctttcttggcaaccatcccaactctgccattatc
ctgcactacgcctggcatggacagggtcagtctccttccattcgtcagctgattatgcat
tcgatggctgagtggtacatgagaggggagcagtatgaccaggccaagctgtctcgcatc
ctggatgtggcccaggacttgaagtctctatcgatgctgctgaatgctactccgtttgcc
tttgtcattgacctcgctgcactcgcctctcgccgtgaatacctcaaacttgataaatgg
ctgactgacaaaatccgggagcatggagaaccgttcatccaggcgtgtgttacgtttctg
aagagacgctgcccatccatcatgggaggtctggctcctgacaaggaccagcccaaaagt
gcccagctgcccccagagactttagccaccatgcttgcctgtttgcagtcatgtgcaggg
agtgtgtcccaggaattgtcggagacgatcctcaccatggttgccaaccgtagcaatgta
atgaataaagctcggcagcctccaccaggagtgatgccgaaggggcgcgccccaagcacc
agcagcctggatgccatctcacctgtacaggtatcggcatgtgacaaacaaacgatggac
actctgactggcataagcgccttgagtctgggcagcaccgccacctcccacactcagagc
atgcagtgcttcgccacctcactgagctcggctctcagtaaccctctgtccccctctaag
gccttccctcctcttccaaacccaaacccaaccacaccttttggggttcatagcagtatc
agttcccagcttcctggtatggactctgccatcagctccagcatcggctccagcatcggc
tccagtctgggaatgtcgtcagtcagcacggatcccttcggcaccaggaagatgagcaca
cctgtgctgaaccctcctacctttcagcagactgatctttctcaggtgtggccagaggct
aaccagcactttagtaaggagatcgacgacgaagcaaacagttacttccagcgtatctac
aaccacccacctcacccgaccatgtctgtggatgaagttctggagatgctacagaggttt
aaggactcgaccatcaagcgagaacgagaggtgttcaactgcatgcttcgaaacttattt
gaggaataccgattcttccctcagtacccggacaaagaactgcacatcactgcttgcctc
tttggtggcatcattgagaagggtctggtcacctacatggcgctgggtctggccctgcga
tacgttcttgaagccttgcggaaaccgtttggatccaaaatgtattactttggaattgct
gcactggatagattcaaaaacagacttaaagactaccctcagtattgtcaacacttggct
tcaattggtcactttttgcagtttccacaccatttacaagagtgtgtgcagtatatcgag
tatggccaacagtcacgtgaccctccggtgaagatgcaggggtccatcactacacctgga
agcgtcgccctggcccacgctcaagctcagtcccagcagccgcccagcctcaaagccccc
cagccgggccagcccagtacactggctaccaccaccaccaccacaacgaccactgcagcc
aaaacgggcaccatctcaaggcccacgcagagcaccttcaagaaggatatgcctccttcc
ataaacactaccaacatcgacacgcttctggtggcgacggatcaaaccgaacggattgta
gaacctccagagaatgtccaagagaagattgctttcatcttcaacaacctttctcagtcc
aacatgacacagaaggtagaggagttgaaggaaactgtgaaggaagagtttatgccgtgg
gtgtctcagtacctagtgatgaagcgcgttagcattgagccaaactttcacagtctctat
tccaactttttggacacactgaagaacccggagtttgtcaagatggttctcaatgaaact
tacaggaatatcaaggtgcttctaacctctgacaaggcagctgctaacttctctgatcgc
tccctgctgaagaaccttggccactggttgggcatgatcacactggccaaaaacaagcca
atcctctacacagacctggagctcaaatctctcttgctagaagcttatgtgaaaggccag
caggagctcctctatgtggttccctttgtggccaaagtcttggagtctagcctacggagc
atggtcttcaggcctcagaacccttggactatggccatcatgaacgttcttgctgagctc
catcaggaacatgacctcaagttgaatttgaagtttgagattgaagttctgtgcaagaac
ttgtctctggacatcaacgatctgaagccggggaacctgctgaaggacaaagaaaagctg
aagaacctggaggagcagctgtctgcaccaaagaaagaagcgaagccaccagacgaaatc
ctgccgcctcctaccacaggtgactttgttccgtttccagctccttccacaaccccggct
gccaccaccaccacctgcaccaccaccggaccgcccacgcctcagttcagttaccatgac
atcaatgtctatgccctggcaggcctggctccacatatcaacattaatgttaacatcgct
ctgctgcaggctcatcctcagctcaaacagtgcgtgcgtcagtctgtggagcgagcggtc
caggagctggtgcaccccgtggtggaccgttccatcaaaatagccatgacaacatgtgag
cagatcatcaggaaggactttgccctggattcggaggagtctcgcatgcgcgtagccgcc
caccacatgatgagaaacctgactgctggcatggccatgatcacctgccgcgagccgctg
ctgatgagcatcgccaccaatctgaagaacagctttgctgcggcgctcagggcgccaacg
ccacagcagagagaaatgatggaggaggctgcagccaggattgctcaggataactgtgaa
ctggcctgttgcttcatccaaaaaactgctgtggagaaagctggacctgaaatggacaag
cggctggccacagagtttgagctgagaaagcatgcgcggcaggagggccgtcgctactgc
gaccccgtcgttctaacctaccaggctgagcgcatgccggaacagatcagactcaaggtg
ggaggagtggactctaaacagctggctgtttatgaagagtttgcgaggaacattcccggt
ttcttacccagcaacgatctctcccaacccactggcttcctggctcaacccatgaagcaa
caagcctgggccactgacgacgtggctcagatctacgataaatgcatcacagacttggag
cagcaccttcatgccatttctccagcgctcgccatgaacccactgacccagggtctgcgg
aacctgctggaagccgtggctttggcgcgaaactccagggatggcattgctgcccttggc
ctcctgcagaaggccgttgaaggtctcctggacgccaccagtggtgctgatgctgacctg
ctgcttcgttacagagagtgccacctgctggtgctgaaagctctgcaggatggacgggcc
tacgggccgcagtggtgtaataagcagatcaccaggtgtctgattgaatgtcgggatgaa
tacaagtataacgtggaagcagtggagcttctgatcaggaaccatctggtgaacatgcag
cagtacgatgtgcacctggcgcagtcgatggaaaatggactccactacatggcggtcgca
ttcgccatgcagctggtgaagctgctgctggtggatgagcgcagcgtgagccacgtcaca
gaggccgacctcttccagaccatcgagattctgatgagaacctgcgcacactccagagcc
aacgcaccagaggggcttccccagctgatggatgtcgttcgctccaattacgaagccatg
attgaccgagcacacggagggcccaacttcatgatgcactctgggatttcccaagcttcc
gaatacgatgatcctccaggtctgagggagaaggcagagtacttgctgagagagtgggtc
aacctgtatcactcagctgcagctggcagggacagcaccaaagctttctctgccttcgtt
ggccagatgcaccagcagggcatactgaagacggacgacctgatcacgcggttcttccgg
ctgtgcacagaaatgtgcgtggagatcagctatcgtgcacaagctgaacagcagcacaac
ccagcagctagcgtagccatcatcagagccaaatgttaccacaacctggatgccttcgtc
cggctcatagccctgctagtgaagcactctggagaggccaccaacaccgtgacaaagatc
aacctgcttaacaaggtcctggggattgttgttggagtgctgatccaggaccacgatgtc
cgtcacacagacttccagcagctgccataccatcgcatttttatcatgctgctgttggag
ctcaacgcgcccgaacacgtcctggagaccatcaacttccagacactcactgccttctgc
aacacgttccacatcctgagacccaccaaagctcccggcttcgtgtacgcctggctggaa
ctgatctcccatcgcatcttcatcgccaggatgctggcacacacgccccagcagaagggt
tggcccatgtacgcacagctgctgatcgacctctttaagtatctggctcccttcctgagg
aacgtagagctcaacaaacctatgcaaatcctctacaagggcacactgagggtgcttctg
gtcctgctgcatgatttcccagagttcctctgtgattaccattatggcttctgtgatgtt
atcccacccaactgcatccagcttcgcaaccttatcctcagtgccttcccacgcaacatg
aggcttccggatcccttcacgcccaacctaaaagtggacatgctgagcgagatcaacatc
gctccccgtatcctcaccaacttcacaggcgtcatgccgtctcagttcaagaaggatctg
gactcctacctgaagacacgctcacctgtgactttcctgtctgagcttcgcagcaaccta
caggtgtcgaacgagccaggaaaccgctacaacatccagctgatcaacgcgttagtgttg
tatgtcggcacacaggccattgctcacatccacaacaagggcagcaccccgtccatgagc
accatcacacactctgcacacatggacatcttccagaacctggctgtggacctggacact
gaagggcgatacttgttcctgaacgcgatagccaatcagctgcgctacccgaacagccac
actcactacttcagctgcaccatgctctacctgtttgctgaggccaacaccgaggccatc
caggagcagatcaccagggttctgctggagaggctgatcgtcaacagacctcacccctgg
ggactcctcatcaccttcatcgagctgatcaagaatcctgccttcaagttctggagtcac
gactttgttcactgtgcgcctgagatcgaaaagttgttccagtccgtggctcagtgctgc
atggggcagaagcaggcccagcaggtgatggagggcaccagtgccagctaa
DBGET
integrated database retrieval system
