Gambusia affinis (western mosquitofish): 122840356
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Entry
122840356 CDS
T07758
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122840356 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gaf03041
]
122840356 (prpf40a)
Spliceosome [BR:
gaf03041
]
Complex A
U1 snRNP components
U1 related factors
122840356 (prpf40a)
Complex B
122840356 (prpf40a)
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
122840356
NCBI-ProteinID:
XP_043988618
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Position
LG11:17910470..17925454
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AA seq
875 aa
AA seq
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MSSTETNNGPSQAAPYAAVPPAAIPPPYMGPPGIPPHFPPMGIPPMGQRPPSMTPMPPGI
MPPGIMPPMGQMIPPMIPGMMLPPRIPAVTVQPTGPPGVDTTVPAAAAPGTTNATNGSPP
EEQPKKKSVWTEHKSLDGKTYYYNTETKQSTWEKPDELKSPAEQMLSKCPWKEYKSDTGK
PYYYNSQTKESRWTKPKELEDLEAMIKAEESGTTETAAPGTTAAPTVQADKNTAAMVTVK
EVETAAAVPEEQQSQVTSHQTAEVKAVEAPVTSSESAVIAESKPSVEVKEEERPELQKKT
YKWNTKEEAKQAFKELLKEKGVSSNSSWEQAMKLIINDPRYSALPKLSEKKQAFNAYKVQ
TEKEEKEEARIKYKESKEKFQRFLENHEKMTSTTRYKKAEQMFNELEVWSCVPERDRLEI
YEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAEDE
ELQNMDKEDALICFEEHIRALEKEEEEDKQKTLLRERRRQRKNRESFQKFLDELHDHGQL
HSMSSWMEMYPTLSSDMRFSSMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDILKDKG
FLVEVNTSFDDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKE
AAFKTMLKQATPPLEPEASWEEVRERFLKEAAFEDVTLESERKRIFKDFMHVLEHECQHH
HSKTKKHSKKSKKHHRKRSRSRSGSESEEEEYHKKKKRSQSKSPSERSSSGESERSYKKS
KKHKKKGKKRRHKSASPDSDGEKKGREREGKRERDSEKDKENDKTRGKSRSESKQKSPKR
KAAKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaacggagacaaataatggcccaagccaggcggcaccttatgcagctgtcccc
cctgcagccataccgcctccatatatgggaccaccaggaataccacctcacttcccaccc
atgggaataccccctatgggtcagcgacctcctagcatgactccaatgccacctggaata
atgccaccaggcataatgccgccaatggggcagatgataccgcccatgatcccgggaatg
atgctgcctcctcggattccagctgtgaccgtacagccgacgggaccccctggtgttgac
accacagtccctgcagcagctgcacctggaacaactaatgcaacaaatggatcccctcca
gaagaacagccaaagaagaaatctgtgtggacagaacacaaatctttagacgggaaaaca
tattattacaatacagaaaccaaacagtccacatgggagaaaccggatgaactgaaatct
cctgcagagcaaatgctgtctaaatgcccctggaaggagtacaagtctgacacagggaag
ccttattattacaactctcagacaaaggagtccagatggaccaaacccaaggagctggag
gatctggaggctatgatcaaagcagaggagagtggaacaacagagactgcggctcctgga
acgactgccgctcctacagtgcaggctgataaaaatacagccgccatggtgaccgtaaag
gaggtggaaactgcagcggcggtcccagaggagcagcagtcccaggtgacctcacatcaa
acagctgaggtcaaagctgtggaggcacctgtgacttcctcagagagcgctgtcattgca
gagagcaaacccagtgtcgaagtcaaagaagaagaacgacctgaacttcagaagaaaacc
tacaagtggaacacaaaagaagaagccaagcaggccttcaaagagctgctgaaggagaag
ggtgtttcctcaaactcctcatgggaacaggccatgaagctgattatcaatgatcctcgc
tacagcgctcttcccaaactgagtgagaagaagcaggcgtttaacgcctacaaagtccaa
accgagaaggaggagaaggaagaggccaggattaaatacaaggagtccaaagaaaagttc
cagaggttcttggagaatcatgagaagatgacgtctaccaccagatacaagaaagcagag
caaatgtttaatgagctggaagtgtggagctgtgttcctgagagagacagactggagatc
tacgaagacgtgttgttctacctggcaaagaaagagaaggaacaagccaagcagctgagg
aagaggaactgggaagctctgaagaacattctggacaacatggctaacgtgacatatcgc
accacctggtccgaggcccagcagtatctgctggacaaccccacgtttgccgaggacgaa
gagctgcagaatatggataaagaggacgccctcatctgttttgaggagcacatacgagct
ctggagaaggaggaggaagaagacaagcagaagactctcctcagggaacggagacggcag
cgcaagaacagagagtccttccagaaatttctggatgagctccacgatcacggccagctt
cactccatgtcctcctggatggagatgtacccgaccctgagctctgacatgcgcttcagc
agcatgctgggccagcctggttccactcctttggacctcttcaaattctacgtggaagac
ctgaaagcccgttaccacgatgagaagcgaataattaaagatatcctcaaggataaaggc
ttcctggtggaagtgaacaccagctttgatgactttggatccgttatcagctcagacaag
agagccactactctggatgctgggaacataaagctggcctttaacagtttactggagaag
gctgaagccagagagcgagagcgagagaaggaggaagcccgcaagatgaagcggaaagaa
gcagctttcaaaaccatgctgaagcaggccacaccgccgctggagccagaggcctcatgg
gaggaagtcagagaaagattcctgaaagaagctgccttcgaagacgtgacgctggagtcg
gagaggaagaggatattcaaagatttcatgcatgtcctggagcatgaatgccagcatcac
cattccaagacaaaaaagcattcaaagaagtccaagaaacaccacaggaagcgatcacgc
tctcgatcaggatcagagtcagaggaggaggagtaccacaagaagaagaagcggtcccag
tccaaatctccctctgagcgctcttctagtggagaatctgagcgaagctataaaaaatcc
aagaagcacaagaagaaaggcaagaagaggcgccacaagtctgcctcaccggactcggac
ggcgagaagaaaggaagagagcgcgaggggaaacgagagcgagattcagagaaggataaa
gagaacgacaagactcgggggaaatctcgctcagagtctaaacagaaatctcctaaaagg
aaagcagccaaagaggagggtggctgggacacgtcaggcagtgagctgagtgaaggagag
ctggagaagagaagaagaactttactggaacagctggatgcaccttga
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