Gambusia affinis (western mosquitofish): 122843725
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Entry
122843725 CDS
T07758
Symbol
col9a2
Name
(RefSeq) collagen alpha-2(IX) chain
KO
K08131
collagen type IX alpha
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf04510
Focal adhesion
gaf04512
ECM-receptor interaction
gaf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122843725 (col9a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122843725 (col9a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122843725 (col9a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
gaf00535
]
122843725 (col9a2)
Proteoglycans [BR:
gaf00535
]
Extracellular matrix (ECM) proteoglycans
Others
122843725 (col9a2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
122843725
NCBI-ProteinID:
XP_043994665
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Position
LG14:16193977..16366561
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AA seq
688 aa
AA seq
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MAALSALLKTWVVLQTLCLALAQVRGPPGPQGLPGPPGIPGSDGIDGEKGPAGSPGPPGQ
KGEPGEPGPNGPPGENGIDGLIGAKGDRGPIGSPGPKGQPGPSGEPGRPGVGLPGLGGAP
GPIGLPGQIGPPGPKGVLGPPGPPGLPGPPGKPGPPGKFIGLEEGSADLQCPLNCPAGPK
GPQGLQGVKGHKGRAGILGDPGSIGKPGPKGDVGISGEQGIPGPPGPLGLRGYPGMMGPK
GEAGPRGYKGIVGPVGIPGPPGEEGPQGPLGDSGDKGDKGGRGIQGPQGAVGKKGENGLP
GIDGKDGTPGIPGIKGAPGQPGIPGPPGPAGTAGLPGTPGGKGQPGRKGEPGPRGHSGMP
GTPGPLGEPGIPGEPGMEGVPGPKGDRGQRGPVGPQGSVGKPGSKGERGPIGIPGPQGLT
GTKGDQGFQGKVGPKGDIGDPGVEGLAGEKGEKGLSGEPGPKGQQGIRGDPGHNGPTGDP
GKPGDPGPPGLPGPRGLNGERGVPGVPGIAGPAGRDATDQHIVEVVLKMLQERLQAVAVS
AKRAVLGGAGVMGSPGPPGPPGAPGPQGPHGLPGTRGIPGMIGGPGQIGNTGLKGKRGPK
GERGDPGKPHPGQPGPPGIQGPPGVDGVARDGRPGERGPQGAAGEPGHPGKAGPLGLPGY
CEAAMCLAASAYTSPRLQEAGTIKGPNV
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggctgctctctccgccttgctgaagacctgggtcgtcctgcaaaccctgtgcctggct
ctggcacaagtgaggggtccgcccggacctcagggtctaccaggtcctcctggcattcct
ggctcggatggcattgatggggagaaaggaccggctggttcccctggcccaccgggacaa
aagggagagccaggagagcccggccccaatgggccccccggagagaacggcattgacggt
ttgattggagcaaaaggtgatcgcggaccgatcggtagccccggcccaaagggtcaacca
ggaccaagcggtgagcctggacgtccaggagtcggccttccaggtctgggtggtgcccca
gggccaattggccttccaggtcaaattggaccgcctggaccaaagggtgttttgggacca
ccaggtcctccaggactccctggacctccaggcaaaccgggtcctccaggcaagtttatt
ggtctcgaggagggtagtgcagacttgcagtgtcctctcaactgcccagcaggaccaaaa
ggccctcagggactgcagggtgtaaagggacacaaagggcgtgccggcattctcggagac
cccggcagcatagggaaaccgggacccaagggagatgttggtatctctggggaacagggc
atcccaggacccccgggtccgttgggtctgcggggttatccaggaatgatgggccctaaa
ggagaggctggccctcgtggatacaagggcatcgttggacctgtaggaattcctggacct
cctggtgaggagggacctcaggggccacttggagactcgggagacaaaggagacaaaggc
ggccgaggcatccagggcccgcagggggccgttggcaaaaagggggagaatggtcttccg
ggtatcgatggaaaagatggcacacctggcattcctggaatcaagggggctcctgggcaa
cctggaatacccggccctcctggtcctgcggggacggcaggtttgcctggaacgccgggg
gggaaagggcagcctggaagaaagggggagcctggaccaaggggccacagtggcatgcct
ggtactcctggtcctttgggtgaaccaggtattcctggagagccaggtatggaaggagtt
cccggacctaagggtgacagaggacagcggggaccagtggggccacagggatcagtcggc
aagcccgggagcaaaggagaaagagggcctattggaatcccaggcccacagggtcttact
gggactaaaggggaccagggcttccaaggaaaagttggtccgaagggagacataggcgac
ccgggtgttgagggactggctggcgagaaaggcgaaaagggtttgtctggtgaacccggg
cccaaagggcagcaaggaattaggggggaccccggacacaacggccccactggagacccc
gggaaaccaggggatccggggccgcctgggctgccgggcccaaggggactcaacggagag
agaggagtacccggcgtaccgggcattgctggaccagcagggcgtgacgcaaccgaccag
catatcgttgaagtggtgctaaagatgttgcaggagagactgcaggccgtggcagtgagt
gccaaaagggctgtgcttggtggtgcgggtgtaatgggatctccggggcctcctggtcca
ccgggggcacctggcccccaggggccacatggcttacctggcacccgtggtatccctggg
atgattggaggacctgggcagattggaaacactggactaaaaggaaagagagggccaaag
ggagagagaggagatccaggaaaacctcacccaggtcaaccaggacctccagggatccaa
ggtcctcctggcgttgatggcgtggctagagacggcaggcctggagagagaggacctcag
ggagccgctggtgagccgggtcaccctggcaaggcaggaccccttggtcttcccgggtac
tgcgaggcagcaatgtgtctggcagcatcggcgtacacctcgccgagattacaagaggcg
ggaacgatcaaaggacccaatgtttag
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