Glaciecola sp. 4H-3-7+YE-5: Glaag_2133
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Entry
Glaag_2133 CDS
T01483
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
gag
Glaciecola sp. 4H-3-7+YE-5
Pathway
gag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Glaag_2133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gag03019
]
Glaag_2133
03009 Ribosome biogenesis [BR:
gag03009
]
Glaag_2133
Enzymes [BR:
gag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Glaag_2133
Messenger RNA biogenesis [BR:
gag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Glaag_2133
Ribosome biogenesis [BR:
gag03009
]
Prokaryotic type
rRNA processing factors
Glaag_2133
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AEE23078
LinkDB
All DBs
Position
complement(2495033..2498296)
Genome browser
AA seq
1087 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDY
GAERHGFLPLKEIARTYFPQGYKFEGRPNIKDVIKEGQEVIIQIDKEERGQKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTDLKQALSNLTLPDGMGLIVRTAGVGKSAEEL
QWDLSVLLTHWTAISEAADSRPAPFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQA
MKHIELVRPDFANRVKLYRGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGSDIEETAFNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMKDAVRHDRARVQLGRISRFGLLEMSRQRLRPSLGDSAHNVCPRCSGHGTVRGTESLAL
SVLRIMEEESIKDNTGQIEAQLPVNVATYLLNEKRGAVASVEKRHKVQLVIIPNPNMETP
HYHVARRRPDDAIHDMSYNVELMKNEDTEADKAVTATPVKEQPALQSFVSPAKAAPAQTQ
GAKATEVESVSLLTKIASWLKSLFAPAPQPEPEPEVKPQRKPQQRRNRNNPRRGKQGDNR
SEGRNDNRSESRGEKADSRDGNEKPNNRKPRRNDNRKPRNDNKTAKDSTNNTPDQKKEQK
PAAPRKEVKEHKVAERRKRRDNRRSVRVDDTKEQVTSNSTQANGSDVKASTVNQSSAPVE
ANVPKNVEQTSAHNEAATVDTQVPVSAPAHSDDSPKKPKAKGKEKRAQEATHETHEDPAK
PESSDTQDNEKSENTTQRTRSRRSPRHIRAAGQKRRKDEDAQASQSDNEDQAAKQDELQF
DDPQAQAAPVQTEQAIAESVEQAPQQAPDTTVSADVAAPAPAQGDLLSQPEDTISKGEDK
PKAPEVTAVQSEDTQPVVKPASTEQVSPSDTSIAAAESEVPATQEAPVEPQARVESDAPA
TDNASAVEASTNEAPAAHEESAAHEESEHKEAKQEHHKPTKAKAKKSAPKAEKVSATAEK
ISATVAKAKASHPMATPATVEHVFNTLEIGSLADDARPSVKASGRSAAMVAASTRATAPA
TRPTAQD
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaatgcaacgcagcaagaagagttgcgtgttgccctcgttgat
ggtcagaagctttacgatttagacattgaaagcccaggccatgaacagaaaaaagccaat
atatataaaggcactattacccgcgtcgaacccagtttagaagcagcttttgtcgactat
ggcgcagagcgtcacggtttcctgcctttgaaagaaatcgcacgcacttacttcccccaa
ggttacaaatttgaaggccgtccaaacatcaaggatgtcatcaaagaaggtcaagaagtc
attattcaaattgataaagaagagcgcggccaaaaaggcgcagcactaacaacctttatc
agtttagccggtagctacttagtactgatgccgaataacccaagagcaggcggtatttct
cgccgtatcgaaggtgatgaacgtactgatcttaaacaagcgctaagcaacctaacctta
cctgatggcatgggtttaatagtgcgtactgctggtgtgggtaaatcggccgaagagtta
caatgggatttaagcgttttgttaacccattggacagccatttcagaagccgctgattcg
cgccctgctccgtttttaatccaccaagaaagcaatgttatcgtgcgtgctatacgcgac
tatttacgtcgcgatattggtgaaattctgattgataaaaccagcatttacgaacaagcg
atgaagcacattgagttggttcgccccgactttgctaatcgtgtaaaactgtatcgtggg
gatgtgcctttattcagtcactaccaaatcgaaagccaaatcgagtcagcgttccaacgt
gaagtacgcttaccgtcaggtggctcgattgttatcgaccctaccgaagcgcttacatca
attgatatcaactcagctcgtgccaccaaaggcagcgatattgaggaaaccgcatttaat
accaatcttgaagctgccgatgaaatcgcccgtcaattgcgccttcgcgatttaggcggt
ttggttgtgatcgacttcatcgacatgacacctgttcgccatcaacgtgaagttgaaaat
cgaatgaaagatgccgtacgacacgatcgcgctcgtgttcaactcggccgtatttctcgc
tttggcttactggaaatgtcgcgccaacgtttacgcccatcattgggtgactctgcccac
aatgtatgtccgcgttgtagcggccacggtactgttcgcgggaccgaatcattagcgtta
tctgtactacgcatcatggaagaggaaagcatcaaagataatacaggtcagattgaagct
cagcttcctgtcaatgttgcgacttacctattgaatgaaaagcgtggcgccgttgccagc
gttgaaaaacgtcataaagtgcagctagttattattcctaatccgaatatggaaacgcca
cattatcacgttgcgcgtcgtcgccctgacgatgcaatacacgacatgagctataacgtc
gagttgatgaaaaacgaagacactgaagcggataaagcagtcactgccactccggttaag
gaacagcctgcacttcaaagttttgtttcgcctgcaaaagcagcgccggctcaaactcaa
ggagcgaaagcaaccgaggttgaaagtgtttctttgttaactaaaattgccagttggcta
aaatcattgtttgcgcctgcgccgcaacctgagccagagcctgaagttaaaccgcaacgt
aaacctcagcaacgtcgcaaccgcaacaacccacgtcgtggtaaacaaggtgataatcgc
tctgaaggtcgtaacgacaatcgtagtgaaagtcgtggtgaaaaagcggacagtcgtgac
ggtaatgagaagccaaataatcgcaagcctcgtcgcaacgataatcgtaaacctcgtaac
gacaataaaacggcaaaagattcgacaaataacacgccggatcaaaagaaagagcagaaa
cctgcagcgccgcgtaaagaagtaaaagagcataaggtagctgagcgtcgtaaacgtcgt
gataatagacgtagcgtgcgtgtcgatgacactaaagaacaggtaacgagcaatagcact
caagcaaacggttcagatgtgaaagcatctacggtcaaccaatcgtcagcccctgttgaa
gctaatgtaccgaaaaacgttgaacaaactagtgcgcacaatgaagctgcaaccgttgat
acacaagtgcctgtatcggctccagctcacagtgatgattcaccgaaaaagcctaaagca
aagggcaaagaaaagcgtgctcaagaagcaacccatgaaacgcatgaggatccagctaaa
cctgagtctagcgacactcaagataacgaaaaaagtgagaatacaacccagcgtactcgt
agtcgccgttctcctcgccatattcgtgctgccggtcaaaagcgtcgtaaagatgaagat
gcgcaagcgtctcaaagcgacaatgaagaccaagcagcgaagcaagatgagttgcagttt
gacgacccacaagcgcaagccgctccagtgcaaactgagcaagctattgcagagtctgta
gaacaggcaccgcagcaagcacctgatacgacggtaagtgctgatgttgctgcacctgcg
cccgctcaaggtgatttactttctcaacccgaagatacaatctcgaaaggggaagataaa
cctaaagcacctgaagtgactgcggtacaatctgaagatacacaaccagtggttaagcct
gcatcaacggaacaagtttcaccgtctgatacatctatcgctgctgcggaaagtgaagtg
cccgcaacccaagaagcgcctgttgagccacaagcgcgcgtagaatctgacgcgcctgct
actgacaacgcatctgctgttgaagcatctactaatgaagcgcctgctgctcatgaagag
tctgccgctcatgaagagtctgagcacaaagaggcgaaacaggaacaccacaagccgact
aaagctaaagcgaagaaaagcgcgcctaaagctgaaaaggtaagtgcaacagctgaaaaa
ataagtgcaacggttgctaaagcgaaggcttcacatcctatggcaacaccggctactgtt
gaacatgtgtttaatacgctagaaataggttcattagctgacgacgctaggccttcagtg
aaagcatctggacgctcagcggctatggttgctgcgtcaactcgtgcaactgcacctgct
acgcgccctacagcacaagactga
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