Gottfriedia acidiceleris: MY490_01690
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Entry
MY490_01690 CDS
T08082
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
gaj
Gottfriedia acidiceleris
Pathway
gaj03030
DNA replication
gaj03410
Base excision repair
gaj03420
Nucleotide excision repair
gaj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gaj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MY490_01690 (ligA)
03410 Base excision repair
MY490_01690 (ligA)
03420 Nucleotide excision repair
MY490_01690 (ligA)
03430 Mismatch repair
MY490_01690 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gaj03032
]
MY490_01690 (ligA)
03400 DNA repair and recombination proteins [BR:
gaj03400
]
MY490_01690 (ligA)
Enzymes [BR:
gaj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MY490_01690 (ligA)
DNA replication proteins [BR:
gaj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MY490_01690 (ligA)
DNA repair and recombination proteins [BR:
gaj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MY490_01690 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MY490_01690 (ligA)
MMR (mismatch excision repair)
DNA ligase
MY490_01690 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MY490_01690 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
RNA_pol_A_CTD
HHH
5_3_exonuc
HHH_8
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
UPM54613
LinkDB
All DBs
Position
329853..331853
Genome browser
AA seq
666 aa
AA seq
DB search
MDPKIIDKVEELRTKLNQYNYEYYVLDQPSVPDAEYDSLLHELIGLEEQYPTLLTLDSPS
QRIGGQAIDLFEKVVHSHPMLSLGNAFNEGDLRDFDQRIRQDSVGVSYVCELKIDGLAVS
LQYENGLFVKGATRGDGTVGEDITHNLKTIKAIPLRLSEPISIEARGEAFMPKASFEKVN
ESREKNGEELFANPRNAAAGSLRQLDPKIVAKRDLSFFVYGFPTAEEFSIHKHSEALDYL
HKLGFKTNTFRKTCHTIEEVIEYVEEWKEKRPSLPYEIDGIVIKVDEYSIQKKLGSTAKV
PRWAIAYKFPAEEVVTKLVDIELSVGRTGVVTPTAILEPVRVAGTVVKRASLHNEDLIKE
KDIRIGDSVIIRKAGDIIPEVVNVLLDRRTGDEQPFAMPTHCPSCDHELIRVPGEVALRC
VNPFCPSQIREGLIHFASRDAMNIEGLGERVVAQLFDANLIKTFTDLYLLTKEQLLSLER
FGEKSADKLISAIQTSKENSLEKLLFGLGIRHVGAKAAKTLAQHFQTIDRLMEASVEEIT
GINEIGSKMAQSINEYFSQDEVKELISTFKTVGVNTEYKGIQVENINMDSLFAGKTVVLT
GKLEQMTRSEAKKQLEALGAKVAGSVSKSTDLVIAGEAAGSKLDAARKLNIEIWDEERMI
KELQPQ
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
ttggatccaaaaatcattgataaagttgaagaactaagaacaaaattaaatcaatataac
tatgagtactacgtattagatcagccatcagtgccagatgcagagtatgactcactatta
catgaattaattggattagaagaacaatatcctactcttttaacactagattctccatca
caacgtataggtggacaggcaattgatttgttcgaaaaagtcgttcatagtcatccaatg
ttaagcctaggcaatgcgtttaatgaaggagatttaagagatttcgaccaaagaattaga
caggattctgtgggagtatcctacgtttgtgaacttaaaatagatggcttagccgtttca
cttcaatatgaaaatggattatttgtcaaaggtgcaactcgtggtgatggtacagttgga
gaagatattacgcataatttaaagacgattaaagcaattcctttaagactttctgagcca
atttcaatagaagcccgtggtgaagcatttatgccaaaagctagcttcgaaaaggtaaat
gaatcgcgtgaaaagaatggggaagaattattcgcaaatccaagaaatgcagcggctggt
tcattacgtcaacttgacccaaaaattgttgcaaagagagatttatcgttctttgtttat
ggattccctacagctgaggaattttcaattcataagcatagcgaagcattagattatctt
cacaaacttggatttaaaacaaatactttccgtaaaacatgccatacaattgaagaagta
attgaatacgttgaggaatggaaagaaaaacgcccatcattgccttatgagattgatgga
attgtcataaaggtggatgaatacagtattcagaaaaagttaggatcaacagctaaagta
ccaagatgggctattgcatataagttcccagctgaagaggtagtaacgaaattagtcgat
atcgaattaagtgttggacgtacaggtgtagtaacaccaactgcaattttagaacccgtt
cgagttgcaggtacagtagtaaaacgtgcatcgcttcataatgaagatttaattaaagaa
aaagacattcgaattggtgattcagtcattattcgcaaggctggagatattattcctgaa
gtggtaaatgtactattagatcgtcgtactggtgatgaacagccttttgcaatgccaact
cactgcccttcatgtgatcatgagttaataagagtgccaggtgaagtagcacttcgctgt
gtaaatcccttctgtccatctcaaattcgtgaaggattaattcattttgcgtctcgtgat
gcaatgaatatcgagggtctaggtgaaagagtagtagcacaactatttgatgctaatttg
attaagacatttacagatctttatctcctaacgaaagaacaattattatcacttgaacga
tttggagaaaagtcagcagataaattaatttctgcaattcaaacgtctaaagaaaattca
cttgaaaaattattatttggtttagggattcgtcatgttggtgctaaagcagcaaaaaca
ttagctcagcattttcaaacaattgatcgactgatggaagcatcagttgaagaaataaca
ggaattaatgaaattggttctaaaatggctcaatcaatcaatgagtatttttcacaagac
gaagtaaaagaacttatttcaacgtttaaaactgttggagttaatactgaatataaagga
attcaagtagaaaatattaatatggattctctttttgctggtaaaacagtagtattaact
ggtaagctagaacagatgactagaagtgaggctaagaagcaattagaagcacttggcgca
aaagtagcaggaagtgttagtaagagtactgatctagtcatagcaggtgaggcagctgga
tcgaaattagatgctgcacgtaaattaaatatcgagatttgggatgaagaaagaatgatt
aaagagcttcaaccacaataa
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