Grus americana (Whooping crane): 129207876
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Entry
129207876 CDS
T11359
Symbol
COL6A3
Name
(RefSeq) collagen alpha-3(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
game Grus americana (Whooping crane)
Pathway
game04510
Focal adhesion
game04512
ECM-receptor interaction
game04518
Integrin signaling
game04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
game00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129207876 (COL6A3)
04518 Integrin signaling
129207876 (COL6A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129207876 (COL6A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
129207876 (COL6A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
game04147
]
129207876 (COL6A3)
00536 Glycosaminoglycan binding proteins [BR:
game00536
]
129207876 (COL6A3)
Exosome [BR:
game04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
129207876 (COL6A3)
Glycosaminoglycan binding proteins [BR:
game00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129207876 (COL6A3)
Hyaluronan
Extracellular matrix or blood plasma proteins
129207876 (COL6A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
129207876
NCBI-ProteinID:
XP_054685485
LinkDB
All DBs
Position
6:40230723..40294437
Genome browser
AA seq
3006 aa
AA seq
DB search
MRKHRHLPFAAMFCLLLSGFCLVRAQQQAAQESADLIFLIDGSNNIGSVNFQAIRDFLVN
LIESLRVGAQQIHIGVVQYSDQPRTEFALNSYSTKADVLDAVKALSFRGGEEANTGAALE
FVVENLFTQAGGSRIEEAVPQILVLISGGESSDDIREGLLAVKQASIFSFSIGVLNADSA
ELQQIATDGSFAFTALDIRNLDALRELLLPNIVGVAQRLILLEAPTIVTEVIEVNKKDIV
FLIDGSTALGTGPFNSIRDFVAKIVQRLEVGPDLIQVAVAQYADTVKPEFYFNTHQSRKD
VMANVKKMKLMGGTALNTGSALDFVRNNFFTSGAGCRMEEGVLPMLVLITGGKSMDAVDQ
AAAEMKRNRIVILAIGSKNADLAELQEIAHERDFVFNPNDFRVQFMQAILPEVLSPIRTL
SGGLIIQEPPSVQVTKRDIIFLLDGSLNVGNANFPFVRDFVTTLVNYLDVGSDKIRVGLV
QFSDTPKTEFSLYSYQTKSDIIQRMGQLRPKGGSVLNTGSALNFVLSNHFTEAGGSRINE
QVPQVLVLVTAGRSADPFLQVSNELARAGVLTFAVGVRNADKAELEQIAFNPRMVYFMDD
FSALTALPQELNKPITTYVSGGVEEVPLAPTESKKDILFLIDGSANLLGSFPAVRDFVHK
VISDLNVGPDATRVAVAQFSDTIQVEFDFTELPSKQDMLLKVKRMKIKTGKQLNIGAALD
EAIRRLFVKEAGSRIEEGVPQFLVLLAAGRSTDDVEQPSDALKQAGVVTFAIKAKNADPV
ELERIVYAPQFILNVDSLSRISELQPNIVNLLKTIQLQPTVVERGEKKDVVFLIDGSDGV
RRGFPLLKTFVQRVVESLDIGRDKVRVAVAQYSNVIQPEFLLDTHEDKADLINAIQELKI
MGGSPLNTGAALDYLIKNVFTVSSGSRIAEGVPQFLILLTADRSQDDVRRPSVVLKTSGT
VPFGIGIGNADLTELQTISFLPDFAISVPDFSQLDTVQQVVSNRVIRLTKKEIESLAPDL
VFTSPSPVGVKRDVVFMVDGSRYAAQEFYLVRDLIERIVNNLDVGFDTTRISVVQFSEHP
HVEFLLNAHSTKDEVQSAVSRLRPQGGQQVNVGEALEFVAKTIFTRPSGSRIEEGVPQFL
IILSSRKSDDDLEYPSLQVKQVGVAPMVVAKNMDPEEMIQISLSPDYVFQVSSFQELPSL
EQKLLTPIETLTGDQIRRLLGDVQLPVDTFGDEKDVVFLIDSSDSVRPDGLAHIRDFISR
IVQQLEVGPNKVRIGVVQFSNNVFPEFYLKTHKSKNAVLQAIRRLRLRGGSPVNAGKALD
YVVKNYFIKSAGSRIEEGVPQHLVVILGDRSQDDVNRPANVITSTSIKPLGVGARNVDRG
QLQVITNDPERVLVVQDFTGLQTLEKKVQSILEELPIPTTETPGILGPGGKKQADIVFLL
DGSINLGRDNFQEVIQFVYSVVDAIYRDGDSIQVGLAQYNSDVTDEFFLKDYSTKPQILD
AINRVIYKGGRVANTGAAIKHIQAKHFVKEAGSRIDQRVPQIAFIVTGGKSTDDGPSASL
EIAKKGVKVFAVGVRNIDLKEVSRLASESATSFRASTAQELSELNEQVLVTLEAAMEEKL
CPGTTDVTRDCDLDVILGFDVTDVGPGQNIFNSQRGLESRVESVLNRITQMQKISCTGNQ
APNVRVAIMAQARGGPVEGLDFSEYQPELFERFQGMRTRGPYFLTADTLRSYLNKFRSAP
SSSTKVIIHFTDGADDSIDQLEAASSTLHTEGVNALIFVGLDRVSNFDKVMQLEFGRGFT
YNRPLRVNLLDLDFELAEQLDTIAERTCCKVPCKCSGQRGDRGVPGPIGPKGATGDLGYG
GYPGDEGGPGERGPPGVNGTQGFQGCPGHRGTKGSRGFPGEKGELGEMGLDGIDGEEGDK
GLPGSSGEKGYSGRRGDKGVKGERGERGDRGLRGDPGDSGVDNTQRGSRGQKGEIGPMGE
PGLAGPEGQNGGVGRKGMTGRRGTIGVKGTKGSLGQEGPAGEQGMRGPQGPPGQLGTPGI
RGEQGVPGPRAGGGPPGAPGERGRIGPLGRKGEPGNLGPKGPNGQQGPRGEMGDDGRDGI
GGPGPKGRKGERGFIGYAGPKGGPGDRGGAGGPGPKGNRGRRGNAGDPGTPGQKGEVGYP
GPSGLKGDKGESRDQCALVRNIKDKCREYTSPKECPVFPTELAFAIDTSSGVVRDVFNRM
KQTVLRVVNNLTIAESNCPRGARVALVTYNNEVTTEIRFADARKKSSLLQQIQNFQATLT
TKPRSLETAMSFVARNTFKRARSGFLMRKVAVFFSNGDTRASPQLNDAVLKLYDAGVMPV
FLTSRQDPVLIRALEINNTAVGHAIVLPASGSQLNETIQRLLTCHICLDVCDPDPICGFG
SQRPVFRDRRAAPTDVDTDMAFIMDSSESTTPLQFNEMKKYISHLISNLEISSEPKVSQH
HARVAVLQQAPYEYETNSSFPPVKTEFSLTDFGSKEKIINYLQNQMTQLHGTRAMGSAIE
HTMAHIFESAPNPRDLKVIVLMMTGKVNKQELEYLQKVVIDAKCKGYFFVVLGIGSKVNA
KNIYTLANEPSDVFFKLVHKPGELHEEPLLRFGRLLPSFIRSDFAFYLSPEVRKQCEWFQ
SEQQAKSQSPGHTRHKAVYVAPNVTVSQTISASTMVGASIKPVVSTNTRARTTTASTTAQ
TTASAAVQVNATAQSTASTASHAKAAGRTTTNTTGTAAGSGRRRQGAKTHDIQITDVTES
SARLRWASPEPHNTYTFDITITLAHDHSLVQKQNLTGTEHIIRGLRSGQKYFVVITGYQK
SQPKVTYAGTFSTKTPAQPKVSLANMMLNTEPLEGPESDWPDPCLLDFDMGMQCKDYQIV
WFFDYKTKICSQGWYGGCGGNANRFEAEAECVSKCLKPSAAEKAMQQPPLEKRLSSVTDI
CRLQKDEGTCRDFVLKWYYDTNTKSCARFWYGGCGGNENRFNTQKECEKVCVPGNINPGV
VTTMGT
NT seq
9021 nt
NT seq
+upstream
nt +downstream
nt
atgaggaaacatcgacatttgccctttgcggcaatgttttgcctcctactctcaggcttt
tgcttggttcgtgcccagcagcaagcagctcaagagtccgctgaccttattttccttatt
gacggatcaaacaacatcggaagtgtcaattttcaagccatacgtgatttccttgtaaat
ttgattgaaagcctcagagttggagctcagcaaatacacattggggtggtgcagtatagt
gatcaacccagaaccgagttcgctttgaacagctactccacaaaagcggatgttctggat
gccgtgaaggcacttagtttccgcggtggcgaggaagcgaacaccggtgcggcactggag
tttgtggtggagaacctcttcacccaggcgggaggcagcaggatagaggaagcggtgcct
cagattttagtgctgataagtggtggagagtctagtgatgatatccgagagggcttgtta
gcggtgaagcaagctagtatattttcatttagcattggggtcctgaatgctgacagtgca
gagctgcagcagattgctactgatggaagcttcgcatttactgccctggatatccgtaac
cttgatgctcttcgagaattattactgcccaacattgttggagtggcccaaagactcatt
ttgttagaggccccaaccattgtgactgaagttattgaagtgaacaagaaggatatagtc
ttcctcatagatggctcaaccgctttggggactggcccctttaactcaattcgtgatttc
gttgccaaaattgtccaaaggctggaggttggacccgacctgatccaagttgcggtggcg
cagtatgcagacactgtgaagccagagttttattttaacacccaccagagcagaaaggat
gtgatggctaatgtgaagaagatgaagctcatgggtggtacggcactcaacactggctct
gcactggactttgtgaggaacaacttcttcaccagtggtgccgggtgcaggatggaggaa
ggggtgctccccatgctggtgctcatcactggtggtaagtccatggatgctgttgaccaa
gctgcagcggagatgaaaaggaaccggatagtgatccttgccattgggtcgaaaaatgct
gacctggcagaacttcaagaaattgcccatgaaagagattttgtgttcaacccaaatgac
ttccgcgttcagttcatgcaagcgattcttcctgaagtgctgtcgcctatccggaccctc
tctggaggactgattatccaagaaccaccatcagttcaagtaaccaaaagggatatcatc
tttcttttggatggatcactcaacgtcggaaatgccaacttcccctttgtccgtgacttt
gttaccaccctagttaactaccttgatgttggaagtgacaaaatccgtgttggcttagtg
caatttagcgacactcctaaaaccgagttctctctatactcgtaccaaaccaaatcagac
ataattcaacgtatggggcagctgaggcccaagggtgggtcagtgctgaacactggctct
gcactgaactttgtgctttcaaatcacttcacggaagctggtgggagcagaataaatgaa
caagtgccgcaggtcctagtcctggtgacagcagggaggtctgccgatcctttcttgcaa
gtttccaatgaattagctcgggccggagtgctgacttttgctgttggagttaggaatgcg
gataaggcagaacttgaacagattgcctttaatccaagaatggtatattttatggatgat
ttcagtgctctgacagctttaccccaggagttaaataagcctataacaacctatgttagt
ggaggtgtggaagaggttccactcgccccaacagaaagcaagaaagatattttattcctg
attgatggctcagccaacctcttgggtagctttcctgccgtccgggactttgtacacaaa
gtcatttctgacctgaacgtgggtcccgatgccacacgagtagctgtagctcaattcagt
gacaccatccaagtggaatttgactttaccgaactcccatctaagcaagacatgcttctc
aaagtgaaaaggatgaagataaaaaccgggaagcaactgaacattggagctgcactagat
gaagctataagacggctgtttgtgaaggaagctggaagcaggattgaagaaggggttcct
cagtttttggtcctccttgctgctgggagatcaaccgatgatgtggagcaaccatcagat
gctctgaagcaagctggagttgtgacctttgctatcaaagccaaaaatgccgaccccgta
gagctggaaaggatcgtttacgccccgcaattcattctgaacgtcgactccctctctcgg
atttcagagcttcagccaaacatagtcaacctgttgaaaactatccagcttcagccaaca
gtagttgagagaggtgagaagaaggatgtggtgtttctaatcgatggctcggatggtgtc
agaagaggtttccctctactgaagacctttgttcaaagagttgttgaaagcctggatatc
ggtcgtgacaaggtccgtgtcgccgtcgcacagtacagcaacgtcatacaacccgagttc
ttacttgacacccacgaagacaaagcagatctcatcaacgccatccaggagctgaagatt
atgggaggatctcctctgaacactggagcagccctcgactatctcatcaagaacgtgttc
acggtgtcaagcggcagcaggatagcggagggtgtcccgcagttcctgattctgctgacc
gctgacaggtcccaggatgacgtgaggaggccctcggtggtcctgaagacgagtggaacg
gtgcccttcggcatcgggatcggaaatgccgacctcacagagctacagacgatttccttc
ctcccagattttgctatctctgttcctgacttcagccagctggatacggtgcagcaggtc
gtctcgaacagagtcatccggctgaccaagaaagagatagagtcacttgcccctgacctg
gtttttacatcacccagcccagtgggcgtgaagagagatgtcgttttcatggttgacggt
tcccgctatgctgcccaggagttctaccttgtccgcgatctcattgagaggatagtgaac
aacctggacgtgggttttgacaccaccaggatttcagtggtccagttcagtgagcatccc
cacgtggagttcctgctcaacgcccactccaccaaggatgaggtgcagagcgccgtgagt
cggctgcggccgcagggagggcagcaggttaacgtgggggaggcccttgagtttgtggca
aaaaccatcttcacccggccctccgggagccgcatagaggagggcgtccctcagtttttg
atcatcctctcctcccgcaagtctgatgatgacttagagtacccatcactccaagtcaaa
caagtaggggtggcacctatggtggtagcgaagaacatggatcctgaggagatgatacag
atttcccttagtcccgattatgtgttccaagtctccagcttccaggaactgcccagcctc
gagcagaagttgctgactcctattgaaaccctgactggagaccaaatcagacggctgctg
ggagatgtgcaactccctgtagatacttttggtgatgaaaaggacgtagtcttccttatt
gacagctctgacagcgttaggccagacgggcttgctcacattcgggatttcatcagcaga
attgttcagcagctggaagttgggccaaacaaagtgcgaatcggcgtggtgcagttcagc
aacaacgtcttccctgagttctacctgaagacccacaagtccaaaaacgccgtcctgcaa
gccatccgccgcttgaggcttagaggggggtcccccgtgaacgctggcaaagccctagac
tatgtggtaaagaactacttcatcaagtctgcggggagcaggatagaagagggagtgccc
cagcacctagttgtcatccttggagaccggtcccaggatgacgtgaacaggcctgctaac
gtgatcacttcaacgagcattaaacctctgggtgtcggagctcggaacgtggacaggggc
cagctgcaggtcattaccaatgaccctgagcgcgtgcttgtggtacaggacttcacggga
ctccaaactttagaaaagaaggtgcagagtattcttgaagagcttccgatacctacaaca
gaaacccctggaattttaggacctggaggcaaaaaacaggctgacattgtgtttctgctg
gatggctccatcaatctggggagagataacttccaagaagttatccagtttgtctattct
gtggtggatgccatttatagggatggcgactctatccaggtaggactggcccagtacaat
tcagatgtcaccgatgagtttttcctcaaggactattccaccaaacctcagattttagat
gccatcaacagagtcatctacaaaggtggccgagtggcaaacacgggcgcagccatcaag
catatccaggcaaaacactttgtgaaggaggccggcagccgaatcgaccagagggtgccc
cagatcgccttcatcgtcacgggtgggaagtccacggatgatgggccgagtgcctccttg
gaaatcgcaaagaaaggtgtcaaggtgttcgcggtcggtgtgagaaacattgacctgaag
gaagtcagcaggctggccagcgagagtgccacgagtttcagagcgtccacagcccaggag
ctgtctgagctgaacgagcaggtcctggttacgttggaagctgctatggaagagaaattg
tgcccaggaacgacagacgttacaagagattgtgacttagatgtcatacttggctttgat
gtcacggatgttgggcctggtcaaaatatatttaattcccagcgaggtctggaatccaga
gtcgagtccgtgctgaacagaataacgcagatgcagaagatcagctgcaccggcaaccag
gcacccaacgttagggtggccatcatggcccaggctcgggggggacccgtggagggactg
gacttctcagagtaccagcctgagctcttcgagaggtttcaaggcatgcgcacccgcggg
ccctattttctcacggcggatacactgaggtcctacctgaacaaattcagatctgcaccc
tccagcagcaccaaggtcataatccattttactgatggtgcagatgactcgatagatcag
ctggaggctgcttcgtccactttgcatacagaaggtgtcaacgctctcatcttcgtcggg
ctggaccgagtgagcaattttgacaaagtgatgcagctggagtttggtcgtgggttcacc
tacaacagaccgctcagagttaatctgctggacttggatttcgagctggcagagcagctc
gacaccatcgcagagaggacgtgctgcaaggtcccatgcaagtgctcggggcagagaggg
gacagaggcgtgccgggccccataggaccaaagggtgccacgggtgatcttggctatgga
ggctatcctggtgatgaaggaggaccgggagagcgtggaccgccgggtgtgaacgggaca
cagggtttccagggatgtcctgggcacagaggaaccaagggctctcggggattcccagga
gagaagggagaactgggagaaatgggtctggatggcattgatggagaagagggagacaag
ggtttgccaggctcctctggagagaagggatactcgggcagaaggggtgataagggagtt
aaaggcgaacgaggagaacgaggtgaccgtgggctccgcggagacccgggagattcagga
gttgataatactcaacggggatccagaggccaaaagggtgaaatcggaccaatgggagag
ccaggactggcggggccggaaggacaaaacggtggagtcgggaggaagggtatgacagga
cgaaggggaacgataggagttaagggtaccaagggctcgcttggtcaagaggggccggca
ggagaacaaggcatgaggggcccacagggtccgcctggccagctcggcacgccaggcata
agaggagagcaaggcgttcctggaccccgggctggtggtggaccaccaggagccccagga
gagcggggcaggatcggtcccctgggacgaaagggtgagcctggaaaccttggacccaaa
gggccaaatggacagcagggcccacgaggagagatgggtgatgatggacgagatggaatt
ggtggcccaggtcctaaaggcagaaagggagaacgtggcttcataggctacgcaggcccc
aagggtggacctggtgaccgtggtggtgctggaggccctggccctaaaggaaacagaggt
cgcagaggaaatgcaggagatcctgggacacctggtcagaaaggagaggttggataccct
ggaccatccggacttaaaggcgataaaggagaatccagagatcaatgtgcgcttgtgcgg
aacatcaaagacaaatgccgtgagtacaccagtcccaaggagtgtcctgtcttcccaact
gagctggccttcgctattgacacctcctcgggcgtcgtgagggatgttttcaacaggatg
aagcaaaccgtgctcagagtggtcaacaacttaaccattgctgagagcaactgtcctcgg
ggtgcccgggtagctctggtcacctacaacaacgaggtcaccacggagatccgctttgct
gatgccaggaagaaatcaagcctcctccagcagatccaaaacttccaggcgaccctgacc
acgaagccacggagcctggagaccgccatgtcctttgtggccaggaataccttcaagcgt
gcccgaagtggcttccttatgaggaaggtggctgtctttttcagcaacggggacacgaga
gcctccccacagctcaacgacgccgtgctgaaactctacgatgctggggtcatgcctgtg
ttcctcaccagcaggcaggacccagttctcatcagagctctggagatcaacaacacagcg
gttggacatgcaattgttcttccagccagcggaagtcagctgaatgaaactatccagagg
ctcttgacttgtcacatttgtctggatgtgtgtgaccctgatcccatctgtggttttggt
agtcagagacctgtatttagagacagaagggcagccccaacagatgtagacactgacatg
gccttcatcatggatagctcagagtccaccacccctctgcagttcaacgagatgaagaag
tacatttcccacctcataagtaacctggaaatcagctctgagccaaaagtatctcagcac
catgcaagagtagcggttctccagcaagctccttatgaatacgaaaccaactcaagcttc
ccaccagtaaaaactgagttttcgctaactgattttggatccaaagagaagatcattaat
taccttcagaaccaaatgacccagcttcatggcacaagggctatgggaagtgcaattgaa
cacacgatggctcatatttttgaaagtgcaccaaaccctcgggatctaaaagtcatagtt
ctgatgatgactggaaaagtgaataaacaagaacttgagtacctgcagaaggttgttatt
gatgcaaaatgcaaagggtacttctttgttgtcttgggcattggcagcaaggtgaatgcc
aagaatatctataccctagctaatgagccaagcgatgtgttcttcaagctggtccataaa
ccaggagagcttcatgaagagcccttactacgctttgggagactgctgccatcttttatc
agaagcgactttgctttctacctgtctccagaggtaaggaaacagtgcgagtggttccag
agtgagcagcaagccaagagccagagccccgggcacaccaggcacaaagcagtgtacgtg
gcacccaacgtgaccgtcagccagaccataagtgccagcaccatggtcggtgcgagcatc
aagcctgttgtgagcaccaacacccgtgccagaaccaccactgccagcaccactgcccag
accacagccagcgccgcggtccaggtgaacgccacggcgcagagcacggcaagcactgcc
tcccacgccaaagccgccggccgcaccaccacgaacaccacgggaactgcggcgggcagt
ggcaggagaagacaaggcgcgaagacgcacgacatccagatcacagatgtcaccgagagc
agtgccaggctgcgctgggccagccccgagccacacaacacctacacttttgatatcacc
atcaccttagcgcatgaccactctctggtgcagaagcaaaacctgaccggcaccgagcac
atcatccgaggactcagaagcggacagaaatactttgtcgtcattaccggctaccagaaa
tcccaacccaaagtaacctacgcagggacgttcagcacgaagaccccggcgcagcccaag
gtgtccttggccaacatgatgctcaacaccgagccgctggaagggcctgagagcgattgg
ccagacccttgcttgctggactttgacatgggcatgcagtgcaaggactatcagattgtg
tggttctttgactacaaaaccaagatctgcagccagggttggtatggtggctgcggtggt
aatgccaatagatttgaggccgaagctgagtgtgttagcaaatgcttaaaaccatcagca
gctgagaaagcgatgcagcagccacccctcgagaaaagattatcatcagtcacggatatc
tgccggctgcaaaaagacgaggggacctgcagggactttgtgctgaaatggtactatgac
accaacaccaagagctgcgcccggttctggtacggcggctgcggaggcaacgagaacaga
tttaacacgcagaaagaatgtgaaaaagtttgcgtccctggcaacattaaccctggcgtg
gtgacgacgatgggcacatag
DBGET
integrated database retrieval system
