Gracilinanus agilis (agile gracile opossum): 123242629
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Entry
123242629 CDS
T07702
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas04151
PI3K-Akt signaling pathway
gas04382
Cornified envelope formation
gas04510
Focal adhesion
gas04512
ECM-receptor interaction
gas04820
Cytoskeleton in muscle cells
gas04926
Relaxin signaling pathway
gas04933
AGE-RAGE signaling pathway in diabetic complications
gas04974
Protein digestion and absorption
gas05146
Amoebiasis
gas05165
Human papillomavirus infection
gas05200
Pathways in cancer
gas05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
123242629 (COL4A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
123242629 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
123242629 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
123242629 (COL4A1)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
123242629 (COL4A1)
09154 Digestive system
04974 Protein digestion and absorption
123242629 (COL4A1)
09158 Development and regeneration
04382 Cornified envelope formation
123242629 (COL4A1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
123242629 (COL4A1)
09162 Cancer: specific types
05222 Small cell lung cancer
123242629 (COL4A1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
123242629 (COL4A1)
09174 Infectious disease: parasitic
05146 Amoebiasis
123242629 (COL4A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
123242629 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gas04147
]
123242629 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
gas00536
]
123242629 (COL4A1)
Exosome [BR:
gas04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
123242629 (COL4A1)
Glycosaminoglycan binding proteins [BR:
gas00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
123242629 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
123242629
NCBI-ProteinID:
XP_044526466
LinkDB
All DBs
Position
3:509842693..510049715
Genome browser
AA seq
1668 aa
AA seq
DB search
MNPRPGVAGCLLLLLAALLLNEERSKAAAKGCSGSGCGKCDCNGVKGQKGERGLPGLQGV
IGFPGMQGPEGPHGPPGNKGDAGEPGLPGTKGTRGPPGSSGYPGNPGLPGIPGQDGPPGP
PGIPGCNGTKGDRGPVGPPGLPGFSGIAGPPGLPGMKGDPGEILSLIPGMPLKGERGFPG
PPGPMGPRGNPGLPGMDGPPGYSGPPGPPGPPGLPGEKGQMGLSFQGPKGDKGEQGVSGP
PGEPGQAQVGKKGDFITQGQKGQKGEPGMPGMPGEREKGEPGKPGPRGKPGKDGEKGERG
SPGFPGEAGFPGIPGRDGPKGDKGQTGPPGPPGSVISTQPGGEKGEKGYPGTPGLRGEPG
QKGIPGPPGPPGYPIPGQIGAPGFPGERGEKGDPGPPGQSLPGPSGRDGDPGVPGPPGAP
GLPGHTNGIVECQPGPPGDQGPRGSPGLPGLAGEMGEKGDRGQGCLTCDVEQGLPGLPGP
RGPQGEIGFPGQPGAKGDRGLPGHNGLEGMPGPPGLPGLRGEPGAKGEPGEIFFDAKLKG
DKGEPGFPGQPGIPGRAGTPGRDGHPGLQGPKGSPGSVGPKGERGPPGGVGFPGSHGDIG
PPGPPGYGLPGPVGDKGQSGFPGSPGPPGLPGAKGEAGKVVPLPGPPGAAGLPGPPGFPG
PQGDRGFPGSPGRQGAPGEKGAVGQPGIGFPGPPGPKGVDGLPGAIGQPGNPGRPGFDGL
PGNPGVPGQKGEPGVGLPGPKGSSGLPGIPGLPGEKGNVGGPGIPGEHGLIGPPGLQGLR
GDPGAQGIQGPKGAPGVPGIGPPGVMGPPGGQGPPGLAGPPGIKGEKGYPGFPGSDMPGP
KGDKGSPGLPGLTGQIGLPGPPGTQGTPGLPGFPGPKGEMGVMGTPGQPGPPGPAGSPGF
QGVKGDQGFPGTTGPRGDPGYKGDKGDAGLPGKPGSMDPVDMDSMKGQKGDPGEKGQVGP
TGDKGARGDPGTPGVPGKDGQAGTPGQPGPKGDQGLGGSPGAPGLPGPKGSVGGMGMPGS
PGEKGAPGIPGSQGIPGFPGLKGEKGAKGEAGRPGIGTPGLPGEKGDPGPSGFPGRPGEK
GEKGSPGMPGMPGPPGPGGVPGNVGYPGSPGMPGEKGDKGLPGLDGVPGLKGDAGQPGHP
GPAGPAGQKGEPGGDGIPGSSGEKGEPGLPGRGLPGFPGSKGDKGSKGELGFPGSAGSPG
IPGSKGEPGFMGPPGPPGHQGLPGVPGRAVEGPKGDRGPQGQPGIPGVPGPMGPPGLPGL
DGAKGEKGNPGWPGSPGAPGAKGDPGFQGMPGIGGTPGVTGSKGDMGPPGVPGFQGAKGF
PGIQGLKGDQGDQGLPGSKGLPGPPGPPGPYSIVKGDPGIPGPEGPAGLKGLPGPPGPKG
QQGVTGSAGTPGPPGIPGFDGAPGQKGEQGPFGPPGPRGLTGPPGPDGLPGSMGPPGTPS
VDHGFLVTRHSQTTDDPPCPPGTKIIYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMP
FLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPISGENIRPFISRCAVCEAPAMVMAVH
SQTIQIPQCPNGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGT
CNYYANAYSFWLATIERNEMFKKPTPSTLKAGELRTHVSRCQVCMRRT
NT seq
5007 nt
NT seq
+upstream
nt +downstream
nt
atgaacccacggccgggtgttgctggctgcctgctgctgctgctggctgccctcctgctc
aacgaggagcggagcaaagcagccgcaaagggctgttctggttcaggatgtggaaaatgt
gattgcaacggagtgaaaggccaaaaaggggaacgaggtcttccaggattgcaaggtgtc
attggatttcctggaatgcaaggtcctgaaggtccacatgggcctcctggaaataaggga
gatgccggagaaccaggactaccaggaactaaaggaacaagagggccaccaggctcatct
ggctaccctggaaacccaggacttcctggtattccaggccaagatggtccacctggtcct
cctggtatcccaggatgcaatggtacaaagggggatagaggtccagtaggtcctcctggc
ttgcctggattttctgggatagcaggtccccccggattgccaggaatgaagggagaccca
ggtgaaattcttagtctaattccaggcatgccattgaaaggtgaaaggggatttcctgga
ccccctggaccaatgggtccaagaggaaatccaggattaccaggcatggatggtccacca
ggctattcaggaccacctggtccaccaggccctccaggacttccaggtgaaaagggtcaa
atgggtttgagttttcaaggacccaaaggtgacaagggtgagcaaggagtcagtggacct
ccaggtgaaccagggcaagctcaagtaggaaaaaagggagattttattactcaaggacaa
aaaggtcaaaaaggagaacccggaatgcctggaatgccaggtgaaagagagaaaggtgaa
cctggtaaacctgggcctcgagggaaaccaggaaaagatggtgaaaaaggagaaaggggg
agcccaggttttccaggtgaagcaggattcccaggaataccaggtcgagatggtcctaag
ggagacaaaggacaaactggccctccaggtccaccaggctctgtgatcagcacacaacca
ggaggtgaaaaaggagagaagggatatccaggtactccaggattaagaggtgaaccaggt
caaaaaggtatcccaggtccaccaggtcccccaggctacccaatcccagggcaaattggt
gctcctggatttcctggagaaagaggagaaaaaggtgacccaggtcctccaggacaatca
ttgcctggaccaagtggaagagatggggatccaggagttcctgggcctcctggagctcct
ggtttaccaggccatacaaatggaattgtggaatgccagcctggaccacctggagatcaa
ggtccacgaggaagtcctgggctaccaggattagcaggggagatgggagagaaaggtgac
agaggtcaaggttgcctaacatgtgatgtagaacaaggactgcctggacttccaggtcct
cgaggaccacaaggagaaataggttttccaggacagccaggtgccaagggagacagaggt
ttacctggacataatggtcttgaagggatgcctgggcctccaggtttgccaggactgaga
ggtgaaccgggagcaaagggagagcctggagagatattttttgatgcaaaactcaaaggt
gacaagggagaaccaggttttccaggacaaccaggtatccctggaagggcaggaacacct
ggaagagatggccatcctggtctccagggccctaaaggctcaccgggttcagtaggacca
aaaggagaacgaggtccccctggaggagttgggtttcctggaagtcatggtgacataggc
cctcctggcccaccaggatatggcctacctggcccagttggtgacaaaggacaatcaggt
tttccaggaagccctgggccaccgggcctcccaggtgctaagggtgaagcaggaaaagtg
gttcctctacctggccccccaggagcagcaggacttccaggacccccaggtttcccaggt
ccccaaggtgacagaggttttcctggcagtccaggcagacaaggagctccaggagaaaaa
ggtgctgtaggccaaccaggaataggatttccaggacccccaggaccaaaaggtgttgat
ggcttgccgggagctataggtcaaccaggaaatccaggtcgtccaggttttgatggtttg
ccaggaaatcctggtgtaccaggccaaaagggtgagcctggagtaggtctaccaggtccc
aaaggatcttcaggtcttcctggcattccaggccttcctggtgaaaagggtaatgttggt
ggaccaggcatcccaggagaacatgggcttattgggccacctggactacaaggactcaga
ggtgacccaggggcacaaggaatccaaggcccaaaaggtgctcctggtgttccaggaata
ggacctcctggagttatgggaccccctggaggacaagggccaccaggattagcaggtcct
cctggaatcaaaggagagaagggttacccaggatttccgggatcagatatgccaggcccc
aaaggagataagggaagtcctggtcttcctggtttaacaggccaaatagggttacctggg
cctcctggcacacaaggaactcctggacttccaggttttccaggtcccaaaggagagatg
ggagtgatgggaacccctggtcagccaggtcctcctggaccagcaggttctccaggattc
cagggagtaaaaggtgaccaaggtttcccaggtacaacaggacccaggggtgatccaggt
tacaaaggtgataaaggtgatgctggtctccctggaaagccaggatctatggatccagtg
gacatggacagcatgaagggccagaaaggagatccaggagaaaaaggacaagttgggcca
actggagataaaggggctagaggagatcctggcactccaggagtacccgggaaggatgga
caagcaggaactcccggccagccaggtcctaaaggtgatcaaggtcttgggggatctcca
ggcgctccaggattaccaggaccaaagggttctgttggtggaatgggcatgccagggtcc
cctggagaaaaaggagcaccaggaatcccaggctctcaaggtatccctggattccctgga
ttaaaaggagagaaaggagcaaaaggagaagcaggtcgtccaggcattgggactccaggg
cttcctggtgaaaagggagaccctggaccttcaggttttccaggaagacctggtgagaag
ggagaaaaaggaagcccagggatgccaggaatgcccggtcccccaggtcctggaggcgta
cctgggaacgtgggctatccagggagtcctggaatgcctggggagaaaggtgacaaagga
cttcccggtttggatggtgtccctggacttaaaggagatgcaggtcagcctggccatcca
gggccagcaggtccagctggccaaaaaggtgaaccgggtggtgacggaattccaggatca
tctggtgagaagggtgaaccaggtcttccaggaagaggacttccaggatttccaggttcc
aaaggagataaaggttccaagggcgagttgggtttcccaggatcagcagggagcccagga
attcctggatccaaaggagaaccaggatttatgggtccaccgggtcccccagggcatcag
ggattacctggagtacctggtcgagctgtggaaggtcctaaaggagacaggggtccacaa
ggtcaacctggtatacctggtgttcctggacccatgggccctccaggtcttccaggactt
gatggagcaaaaggagaaaaaggaaatccaggttggccaggatccccaggtgctccagga
gccaagggagatccaggatttcagggaatgcctggtattggtggtacaccaggagtcact
ggttctaagggtgatatgggacctccaggtgttccaggatttcaaggtgccaagggtttt
cctggaatccaggggctcaaaggagatcaaggagatcaggggctccctggttcaaaaggt
cttccaggaccacctggtcccccaggtccttacagcatagtcaaaggagatccaggtatt
cctggcccagaggggccagcagggcttaaaggtcttccaggtcctccaggccctaagggg
caacaaggtgtaacaggatctgcaggtactcctggaccacctggcatcccaggttttgat
ggtgcacctggacaaaaaggagaacaagggccttttggtcctccaggtccaagaggactt
actggtccaccaggtccagatgggttgccaggttcaatgggtcctccgggtactccctct
gtcgatcatggattccttgttactaggcatagtcaaactacagatgatccaccatgtcct
cctgggaccaaaataatctaccatggctattccttgctctatgtacaggggaatgaacga
gctcatggccaggacttgggtacagcaggaagttgtctacgcaaattcagtaccatgccc
ttccttttctgcaatattaacaatgtttgcaactttgcatcaagaaatgactattcttat
tggttgtctactcctgagcctatgccaatgtcgatggcacccatttctggagaaaacatt
aggccgtttattagcaggtgtgctgtatgtgaggctcctgccatggtgatggcagttcac
agtcaaacaatccaaattccacagtgtcctaatggatggtcatcgctttggattggctat
tctttcgttatgcacaccagcgctggtgccgaaggttctggccaggccctagcttccccg
ggttcctgtctagaagaatttcgaagtgcaccattcattgaatgccatggtcgtgggacc
tgtaattattatgcaaatgcttatagcttctggcttgctactatagaaagaaatgagatg
ttcaagaaacctactccatcgactttgaaagcaggagaactacgcacacacgttagccgc
tgccaagtctgtatgagaagaacataa
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