Gracilinanus agilis (agile gracile opossum): 123246664
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Entry
123246664 CDS
T07702
Symbol
PRKN
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas04120
Ubiquitin mediated proteolysis
gas04137
Mitophagy - animal
gas04141
Protein processing in endoplasmic reticulum
gas05012
Parkinson disease
gas05014
Amyotrophic lateral sclerosis
gas05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
123246664 (PRKN)
04120 Ubiquitin mediated proteolysis
123246664 (PRKN)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
123246664 (PRKN)
09160 Human Diseases
09164 Neurodegenerative disease
05012 Parkinson disease
123246664 (PRKN)
05014 Amyotrophic lateral sclerosis
123246664 (PRKN)
05022 Pathways of neurodegeneration - multiple diseases
123246664 (PRKN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gas04131
]
123246664 (PRKN)
04121 Ubiquitin system [BR:
gas04121
]
123246664 (PRKN)
03029 Mitochondrial biogenesis [BR:
gas03029
]
123246664 (PRKN)
Enzymes [BR:
gas01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
123246664 (PRKN)
Membrane trafficking [BR:
gas04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
123246664 (PRKN)
Aggrephagy
Other aggrephagy associated proteins
123246664 (PRKN)
Xenophagy
Other xenophagy associated proteins
123246664 (PRKN)
Ubiquitin system [BR:
gas04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
123246664 (PRKN)
Mitochondrial biogenesis [BR:
gas03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
123246664 (PRKN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR_2
IBR_1
IBR
Rad60-SLD
Rcat_RNF216
Rad60-SLD_2
Dsc3_N
Crinkler
AsnRS_N
Motif
Other DBs
NCBI-GeneID:
123246664
NCBI-ProteinID:
XP_044531412
LinkDB
All DBs
Position
4:complement(425399750..426940848)
Genome browser
AA seq
491 aa
AA seq
DB search
MGIPRNITCQEDISGRETPSFASKLSEITVFVRFNSSHGFPVEVDADTSIFQLKEVVAKR
QGVPADQLHVIFAGKELRNDLTLQNCDLDQQSIVHVVQRAQRDDRKGDISRQDNPGHSRG
VIGGEPESLTRVDLSSSILPAYSVGLAVILENEDKDDSHQAGHAGTPTYNSFYVFCKGRC
QGVQPGKLRVRCSTCKQATLILDQGPSCWDDVLISNKMSGICHFPDCNGTGAEFYFKCGA
HPTSANETSVALNLITTNSRSISCITCTDVRNPVLVFQCIHRHVICLDCFHLYCVTRLND
RQFIHDPVLGYSLPCVAGCPDSLIKELHHFRILGEEQYNRYQRYGAEECVLQMGGVLCPS
PGCGAGLLPEPEVRKITCEPSNGLGCGFEFCRECKEEYHEGECNTLFEASGAAAQAFMVN
EQAAEKARWEEASKETIKKTTKPCPRCHIPVEKNGGCMHMKCPQPQCKFEWCWNCSLEWN
RTCMGDHWFDV
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgggtattcccagaaatataacatgtcaggaagacatatctgggagagaaactccttca
tttgcatcaaagttgtcagaaataacagtgtttgttaggttcaactccagccatggtttc
cctgtggaggtcgatgcagatacgagcatcttccagctcaaggaggtggttgctaagcga
cagggggttccagctgaccagttgcatgtgatttttgcagggaaggagcttaggaatgac
ttgacactgcagaactgtgatttggatcagcagagtatagttcatgtggtacagagagcc
cagagagatgatcggaaaggggatatatccaggcaggacaatcctggacactctagagga
gtcataggcggagaacctgagagcttaactcgagtggacctcagtagcagcatcctccct
gcttactctgtaggcctggctgttattctggagaatgaagacaaggatgattctcatcaa
gctggacatgcaggtacccccacttacaacagcttctatgttttctgcaaaggacgttgt
caaggtgttcagccaggaaaactcagggtaagatgcagcacctgtaaacaggcaacgttg
atcttggaccagggtccatcatgctgggatgatgtcctaatttcgaacaagatgagtggc
atttgccatttcccagattgcaatggaactggagcagagttctattttaaatgtggtgca
cacccaacctctgccaatgagacatcggtggctctgaacctgattacgacaaacagtcgc
agtatcagctgtattacatgtactgatgtcagaaatcctgtgttggtgttccagtgtatc
catcgccacgttatttgcctagattgtttccatttatactgtgtgacaagattgaatgat
cgacagtttatccatgatccagtgcttggttattcccttccttgtgtggctggctgtcca
gactccttgattaaagagcttcatcacttcagaattcttggggaagaacagtacaaccga
tatcaacgctatggagctgaggaatgtgtcctgcagatggggggcgtcctctgccccagt
ccagggtgtggagcaggtctgctccccgaaccagaagtaagaaaaataacatgtgagccg
agcaacggcctgggctgtggatttgaattctgccgtgaatgtaaagaagaataccatgaa
ggagaatgcaacaccctctttgaagcctcaggagcagcagcccaggcctttatggtgaat
gaacaagctgcagagaaagcaagatgggaggaagcctccaaagaaacaatcaagaaaaca
accaaaccttgtccccgttgccatataccagtggaaaaaaatggaggatgcatgcatatg
aaatgtcctcagcctcaatgcaagtttgaatggtgctggaactgtagcctagaatggaac
cgaacctgcatgggagatcactggtttgatgtgtag
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