Gasterosteus aculeatus (three-spined stickleback): 120809379
Help
Entry
120809379 CDS
T07457
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-1-like isoform X1
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
120809379
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
gat04040
]
120809379
Ion channels [BR:
gat04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
120809379
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
120809379
NCBI-ProteinID:
XP_040019061
LinkDB
All DBs
Position
XIX:4834345..4855257
Genome browser
AA seq
1319 aa
AA seq
DB search
MFNWVVKVVPQPPEAPGTDDAAKTPAGGSTGKQPPQKNSDENSEDSQAQAGVLGWLSNGF
VSALPQPSGSPRLSRSTSDAKPGEDGERSGVIGWVTQGLTKVLPQPEEKYKEAENNDEPT
EIYEVETMPDFDPLPHIPVVEILSEDESEVETPQFPPNVVTWIKRMVPQPILLPPGAVPI
EPSSRASHSSLDKILSPPPESLSGISLDTDSKASAVVGWFVSGLGLKMPQPALPSRDNAE
SATEVLQKASSKLKPDLVLEDVDSDNEDQHKLQDQSRAAALTREATQPAQADPQPESPDS
AGRSQEDAETQTGRWTPFIENIKKEAEGAAFANMEERLLQERVDVARIAEEVARETAETA
IRQMTSEGHSINLSLGSKELLQEEPEVELPVEQEEESEVDKVTETEQSPAVETEELEPKE
EEKSQQTTASPPPSPEPVQIAAPEPEPEPEPEPEPEPEVEPQEAHSEAEPVTQQPQRAEE
GGQSTEADKAGEKEEEAPGDDCGESSSLSLRPAVNVEDVDSEHEKGGEGGAAGEEQSNLP
KILPPQDPKLTTLTVPVTPSGGRQSKGDKDSGRNRRTIWTKIRTLHSQSEDDDDEGRMPV
RAWPSQSSLPYSDEILRERPASAASQTSTVVNDRLQELVRMFKERTEKAKEKLIDPDSSD
EDSIIPSPPQPAPGAQPLDGVEKEAQAGPSGGAGGGGGVESGVVEEQAGRCCKVKTPRWI
RACMHYRFPASIDPFTNLMYVLWMLLVSLAWNWNAWFIPVRCSFPYQTPDNIYYWLLTDY
LCDLIYILDITVFQPRLQFVRGGDIVCEKKDMRKNYMTTRRFKFDVASLVPLELFYFKTG
INPLLRLPRLLKINSFFEFNERLEAILTKAYIYRVIRTTTYLLYCLHCNACLYYWSSAFT
GIGSTIWVYNGEGNSYIRCYYFAVKTLITIGGLPDPTTLFEIIFQLINYFVGVFAFSIMI
GQMRDVVGAATAGQTYYRTCMDNTIKYMSSYRIPKDVQNRVKTWYNYTWQSQGMLDEQEL
LTQLPDKMRLDIAIDVNYSIVSKVPLFQGCDRQMIFDMLKSLRSVVYLPGDYVCRKGEVG
REMYIIKAGEVQVVGGPDGRTVFVTLRAGSVFGEISLLAVGGGNRRTANVIAHGFANLFI
LDKKDLNEILVHYPESKKLLRKKARKMLNKGKKPEPKEEVNPAHVPAAPLRPETPKLLRA
ALEMAEKSSGLKGALSKFKEKYSKSSVSLQPSLSSSLPPPSPTFSSGSDRDVDSPSPVST
CSAALRSASHRPDNSDSAVPPSASRGCGDADQERDVDRREAGVGEVEGSEGGKRKEKKL
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atgtttaactgggtggtgaaagtggtcccacaaccccctgaagctcctggaacagacgac
gccgccaagacccccgccggtggttcaacagggaagcaacctccacagaaaaactcggat
gagaattcagaggacagccaggcccaggcgggagttttaggctggctgtccaatgggttc
gtcagcgccttgcctcaaccttcgggttcccctcgactcagcaggtccacctctgatgcc
aagccaggagaggatggagagaggtctggagtgataggttgggtgactcagggtctgacc
aaggtgttgcctcagcctgaggaaaagtacaaggaggcggaaaacaatgacgaacccacc
gagatctatgaagtcgaaacgatgccagattttgatcccctcccccacatcccagtggtg
gagattttgtcggaggacgagtcggaggtggagacgcctcagttccctccaaacgtggtg
acgtggataaagcggatggtccctcaaccaattttactgccccctggtgccgtacccatt
gagccatcaagcagggcatcccattcctcactggacaaaattttgtctccaccacccgag
tccctcagtggaatctcactggatactgacagcaaggcctcagctgtggttggctggttt
gtgtcaggactcggcctgaagatgcctcagcctgcacttccatccagagataatgctgag
agtgcgactgaagttctacagaaagcttcatccaaactcaaacctgacctggtcctcgaa
gacgtggactcggacaacgaggaccagcataaactccaagatcagtccagagctgcggcg
ctgactcgggaagcgacacagccggcacaggccgacccgcagccagaatccccagacagt
gcgggaaggtctcaagaagacgccgagacccagacgggccgctggacgcccttcatcgaa
aacatcaagaaggaggccgaaggtgctgcttttgctaacatggaggaacgtctgctgcag
gagcgcgtggacgtggcacggattgctgaggaggtggccagagagacggctgagacggcc
atcagacagatgaccagtgaggggcactccattaatttatcactggggagtaaagagctg
ctgcaagaggagcctgaagtcgagctgccagtggaacaagaagaggagagcgaagtggac
aaagtcacagaaacagagcaaagcccggctgtggagacggaggaactagagccaaaagag
gaagaaaagtcgcagcagaccaccgcctctccacctccaagtcctgaaccagttcagatt
gctgcgccggaaccagaaccagaaccagaaccagaaccagaaccagagccagaggtcgag
ccccaggaagcgcactcagaagccgagcctgtgacccagcagccacagagagcagaggaa
ggcggtcaaagcactgaggcggacaaagctggtgaaaaagaggaggaagctcctggagac
gactgtggtgagagctctagcctcagccttcgtccagctgtcaacgtagaggatgttgac
tcggaacatgagaaaggaggagaaggaggggcagcgggggaggaacagagcaatctcccc
aaaatcctcccccctcaggaccccaaacttacaaccctcaccgtccctgtgaccccgtcc
ggaggtcgtcaaagtaaaggagataaagatagtggaaggaatcgtaggactatctggaca
aagattaggacccttcactctcaaagtgaagatgatgatgatgaaggaagaatgcctgtc
agagcctggcccagccagtccagcctgccctattcagatgaaatactgagagagcggcca
gcgtctgcagccagtcagaccagtacggtggtcaacgaccgccttcaggagctggtccgc
atgtttaaggagagaacagagaaggcgaaggagaaactcattgaccccgacagctcagac
gaagacagcatcatcccctctcctcctcagcctgctcccggtgctcagccactggacggt
gtagagaaggaggcacaggcaggtccatcaggaggagcaggaggaggaggaggagtggag
agcggggtggtcgaggagcaggccggccgttgctgcaaggtgaaaactcctcggtggata
cgagcttgtatgcactaccgcttccctgccagcatcgaccctttcaccaacctaatgtac
gtgctgtggatgcttttggtttctctggcgtggaactggaacgcgtggttcatcccggtg
cgctgctctttcccctaccaaaccccagacaacatttactactggctgctgaccgactac
ctgtgcgacctcatttacatcctggacatcaccgtcttccagccgcgcctacagtttgtt
cgcggaggtgacatagtgtgtgagaaaaaagacatgagaaagaattacatgacaaccagg
cgattcaaatttgatgttgccagtcttgttcccctggagctcttctattttaaaactggc
atcaaccctctccttcgcttgcccaggctgctcaagatcaactccttctttgagttcaat
gagcgtttagaggccatcttgaccaaagcctacatctacagagtgatccgcaccaccacc
tatctcctttactgtctccactgtaatgcctgtctctactactggagctctgccttcacg
ggaataggctccaccatatgggtgtacaatggcgaaggcaacagttacattcgctgttac
tactttgcggtgaagaccctgatcaccatcggtggtctgccggaccccaccaccctgttt
gagatcatcttccaactcatcaactactttgttggagtctttgccttctctatcatgatt
ggacagatgcgtgacgtggtgggtgcagctacagcaggtcagacctactaccgcacatgt
atggacaacacgatcaaatatatgtcctcctatcgcatacccaaagacgtgcagaaccgc
gtcaaaacctggtacaactacacctggcaatcacaaggcatgctggatgagcaggaactg
ctgactcagttgccagataagatgcgcctggacattgctatagacgtcaactactccatt
gtcagcaaagtccctctttttcagggttgtgaccgtcagatgatctttgacatgctgaaa
agcctccgctccgttgtctacctgcccggggattacgtctgcagaaagggcgaagtgggt
cgggagatgtacatcataaaggctggcgaggtgcaggtggtcgggggaccggacggcagg
acagtgtttgtcactctcagggcgggatcggtctttggagaaatcagtttgcttgcggta
ggcggcggtaacaggcgaacagcaaatgtaatcgcccacggatttgccaacctcttcatc
ctcgacaagaaagacctgaacgagatcctggtccactaccccgagtccaagaaactgctc
cgcaagaaggccaggaagatgctcaacaagggaaagaaacctgaacccaaagaagaggtg
aacccggctcacgtcccggcagcccctctcagaccagaaactcccaaactgctgagagca
gccttggagatggcagagaaatcctctggactgaaaggagctctgtctaaattcaaagag
aagtacagcaagtccagcgtctccctacagccctccctctcctcctccctgcctcctccg
tcccccaccttcagttccggatccgacagagatgtcgactcgccatcgcccgtctccacc
tgctctgcagcgctccgctccgcctcccatcgccccgacaacagcgactccgcggtgcct
ccctctgcatccaggggctgcggtgacgcagaccaggagcgtgacgtggaccgaagagag
gcgggcgtcggcgaggtcgaagggagcgagggtggaaagaggaaagaaaagaagttgtga
DBGET
integrated database retrieval system
