Gasterosteus aculeatus (three-spined stickleback): 120827821
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Entry
120827821 CDS
T07457
Symbol
scn1lab
Name
(RefSeq) sodium channel, voltage-gated, type I like, alpha b
KO
K04834
voltage-gated sodium channel type II alpha
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
gat04040
]
120827821 (scn1lab)
Ion channels [BR:
gat04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
120827821 (scn1lab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
Spem1
IQ
Motif
Other DBs
NCBI-GeneID:
120827821
NCBI-ProteinID:
XP_040046908
LinkDB
All DBs
Position
I:complement(27539700..27558750)
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AA seq
1674 aa
AA seq
DB search
MCPDRLCPEGFTCIKAGRNPDYDYTSFDTFSWAFLSLFRLMTQDYWENLYQQTLRAAGKP
YMVFFVLVIFLGSFYLVNLILAVVAMAYDEQNQATIEEAQQKEEEFQAMLEQLKRQQEEA
QVAAAAATESGEYSGRGAPTSESSSGMSKLSSKSAKERRNRRKKRRQREEEEGRGGRDKF
HKSESEDSIKRSSFRFSIDANRLSYEKRCSSPNQSLLSVRGSLFSPRRNSRASLFSFHGR
ARDMGSENDFADDEHSTFEEGDSRRGSLFLPRRLERRCSAVSQTSLGAPRIVLPANGKMH
CAVDCNGVVSLVGGTSVTTSPGGLRLTEGTTTDTELKKRRPGFRKPSMDYLDEPVARQRA
MSVASIRTNTMEELEESRQKCPPCWYRFANTCLIWDCFPAWLKIKDIVKTVVMDPFVDLA
ITICIVLNTLFMAMEHYPMTKEFDSVLSVGNLVFTGIFTAEMCLKVIALDPYYYFQQGWN
IFDGIIVSLSLMELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNL
TLVLAIIVFIFAVVGMQLFGKSYKECVCKISEDCQLPRWHMHDFFHSFLIVFRVLCGEWI
ETMWDCMEVAGQTMCLIVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDEDSEMNNLQ
IAVGRIQRGVAFLKSAVRQFVQSLCFGGGVGKGCGLAEESKTLEELHSNGKGNCISNHTS
VEITKDPSAVYMTEGNGRPGGGLAVGLGGDSAEKSPDDECDYMSFIHNPSLTVTVPIAVG
ESDFENPNTEEFSSDSSDVEGSIELDVEPQRLSSSEGSTVDIRPPGDGVDSVELEPEESL
EPEACFTEGCVIRFQCCQIDEEEEHFKRWWTLRKTCFIIVEHNWFESFIIFMILLSSGAL
AFEDIYIEQRKTIKIVLEYADKVFTYIFILEMLLKWVAYGFVKYFTNAWCWLDFLIVDVS
LVSLVANALGYSELTAIKSLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCL
IFWLIFSIMGVNLFAGKYYYCVNTTTDLVFPLDVVNNKTDCLKLANDSARWKNVKINFDN
VGAGYLALLQVATFKGWMDIMYAAVDSRDVEDQPEYEVNLYMYLYFVIFIIFGSFFTLNL
FIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPANAFQGCVFDC
ITKQAFDIVIMVLICLNMVTMMVETDDQTKEMDNTLYRINLVFIVLFTGECMLKMISLRH
YYFTIGWNIFDFVVVILSIVGMFLSEVIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIR
TLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKHEAGIDDMFNFETFGNSMICL
FQITTSGGWDGLMAPILNKREPDCDSQMEHPGNNHTGNCGNPSVAIFFFVSYIIICFLIV
VNMYIAVILENFSVATEESAEPLSEDDFEMFYEVWERFDPDATQFMEYSKLSDFADALDP
PLRMAKPNMLHLISMDLPMVSGERIHCLDILFAFTKRVLGESGEMDVLRGQMEDRFMASN
PSKVSYEPITTTLRRKQEDMAAVIIQRAFRRYKIRLAMKKASALYKERLKEGIHDPDKDV
MVIGKFPENSTSEKTDMTPSTASPPSYNSVTKSYNDKYEKENREKENKGRDRKK
NT seq
5025 nt
NT seq
+upstream
nt +downstream
nt
atgtgtcccgacaggctctgtccagagggcttcacgtgcatcaaagccggccgcaacccg
gactacgattacaccagcttcgacacgttcagctgggcgttcctctccctgttccgcctc
atgacgcaggactactgggaaaacctctaccagcagactctgcgggcggcggggaagccc
tacatggtcttcttcgtgctggtgatcttcctgggctccttttacctggtcaacctgatc
ctggccgtggtagccatggcgtatgacgagcagaaccaggccaccatcgaggaggctcag
cagaaggaggaggagttccaggccatgctggagcagctgaagaggcagcaggaggaggcg
caggttgccgcggcagcagccacggagagcggcgagtacagcgggaggggcgcccccacc
tccgagtcgtcctcggggatgtcgaagctcagctccaagagtgccaaggagcgacgcaac
aggcggaagaagaggaggcagagagaggaagaggaggggaggggcggccgcgacaagttc
cacaagtccgagtcggaggacagcatcaagaggagcagcttccgcttctccatcgacgcc
aacaggctctcgtacgagaagagatgctcctcgcccaaccagtctctcctcagcgtccgc
ggatctctcttctcgccgcggcggaacagccgcgccagcctcttcagcttccacggccgc
gcccgcgacatgggctcggagaacgacttcgccgacgacgagcacagcaccttcgaggag
ggcgacagccgccggggctccctgttcctgccgcggcgcctcgagcgccgctgcagcgcc
gtcagccagaccagcctcggggcgccgcgcatcgtcctgcccgccaacggcaagatgcac
tgcgccgtggactgcaacggcgtggtgtccctggtcggggggacgtccgtaaccacctcc
cccggaggtctccggctgaccgagggtacaactacagatactgagctcaagaagcggcgg
ccaggttttcgcaagccttccatggattatttggatgaaccggtggcccggcagagagcc
atgagcgtggccagtatccgcaccaacaccatggaagagctggaagagtccagacagaaa
tgccccccttgctggtaccggtttgccaacacctgcctgatctgggactgcttccccgcg
tggctgaaaatcaaggacatcgtcaaaacggtggtcatggaccccttcgtggacctggcc
atcacaatatgcattgtgctcaacaccctgttcatggccatggagcactaccccatgact
aaagaattcgacagcgtcctctcagtgggaaacctggtgttcacaggcatcttcacggca
gagatgtgcctcaaggtcatcgccctggatccctactactacttccagcagggctggaac
atttttgacggcatcatcgtcagcctgagcctgatggagctcggcttagccaacgtggag
ggcctgtccgtcctgcgctccttcagactgctgagggtcttcaagctggccaagtcatgg
cccactctgaacatgctgatcaagatcatcgggaactcggtgggggccctggggaacctg
acgctggtgctggccatcatcgtcttcatcttcgccgtggtcggcatgcagctgttcggc
aagagctacaaggagtgcgtgtgtaagatttccgaggactgccagctgccccgctggcac
atgcacgacttcttccactccttcctcatcgtgttccgggtgctgtgcggcgagtggatc
gagaccatgtgggactgcatggaggtggccgggcagacgatgtgcctgatagtcttcatg
atggtcatggtcattggaaacctggtggttttaaacctcttcctggctctcctcctgagc
tcattcagcgccgacaacctggcggcgaccgacgaggacagcgagatgaacaacctacag
atcgccgtgggccggatccagcggggcgtcgcgttcctcaaatccgccgtccggcagttc
gtgcagagcctctgctttggcggcggcgttgggaagggctgcggcctggcggaggagagc
aaaacgctggaggagctgcacagcaacggcaagggcaactgcatctccaaccacacgtcg
gtggagatcaccaaagaccccagcgcggtgtacatgacggagggcaacgggcgcccggga
ggagggctggcggtcgggctcggcggcgactcggcggagaagtccccggacgacgagtgc
gactacatgtcgttcatccacaaccccagcctgacggtcacggtgcccatcgcggtgggc
gagtcggacttcgagaaccccaacaccgaagaattcagcagcgactcgtcggacgtggag
ggcagcatagagctcgatgtagagccccagcggctgagctcatcggaggggagcacggtg
gacatccgccccccgggggacggggtggactcggtggagctggagccggaggaatcgctg
gaaccagaggcctgcttcacggagggctgcgtgatcaggttccagtgctgccagatcgat
gaggaggaagagcattttaagcgctggtggacactcaggaaaacctgcttcatcatcgtg
gagcacaactggtttgaatccttcatcatattcatgatcctgctaagcagcggggcgctg
gcgttcgaggacatttacatcgagcagcggaagaccatcaaaatcgtgctggagtacgcg
gacaaggttttcacttacatcttcatcctggaaatgctgctgaagtgggtggcgtacggc
ttcgtcaagtatttcaccaacgcctggtgctggctggacttcctcattgtggacgtgtcc
ctggtgagcctcgtggcgaacgcgctgggctactctgagctaacggctatcaagtcgctg
aggacactgcgagccctccggcccctgagggccctgtctcggtttgagggcatgagggtc
gtggtcaacgcgctgctgggggccatcccctccatcatgaacgtgctgctggtctgcctc
atcttctggctcatcttcagcatcatgggcgtcaacctgttcgcggggaagtactactac
tgcgtcaacaccaccacggatttggtcttcccgctcgacgtggtcaacaacaagaccgac
tgtctgaagctggccaacgacagcgcgcgctggaagaacgtcaagatcaactttgacaac
gtgggggccggatacctggctctgctgcaagtggcaacctttaagggctggatggacatc
atgtacgcagcggtggactctcgagacgtggaggatcagcccgaatacgaagtgaacttg
tacatgtacctctactttgtcatctttattatcttcggctccttcttcaccctcaacctg
ttcatcggcgtcatcatcgacaacttcaaccagcagaagaagaagtttggaggtcaggac
atcttcatgacagaagagcaaaagaaatactacaacgccatgaagaagctgggctccaag
aaaccacagaaaccgattcctcggccggcgaatgcattccaaggctgcgtgttcgactgc
atcacaaagcaggccttcgacatcgtgatcatggtcctcatctgcctcaacatggtgacc
atgatggtggagacggacgaccagacgaaggaaatggacaacaccctctaccggatcaac
ctggtcttcatcgtgctcttcactggggagtgcatgctcaagatgatctccttgcgtcac
tattacttcaccatcggctggaacatatttgactttgtggtggtgatcctgtccatcgta
ggcatgtttttatccgaagtgatcgaaaagtactttgtgtccccgacgctgttccgagtg
atccgtctggcccggataggccgcatcctccgactcatcaaaggggccaagggtatccga
acgctcctcttcgccctgatgatgtcactgcccgctctgttcaacattggcctgctcctc
ttcctcgtcatgttcatctacgccatcttcggcatgtccaactttgcctacgtcaagcac
gaggcgggcatcgacgacatgttcaacttcgagacgttcgggaacagcatgatctgcctg
ttccagatcaccacgtcgggcgggtgggacggactgatggctcccatcctcaacaagagg
gagcccgactgcgacagccagatggagcacccgggcaacaaccacacgggcaactgcggc
aacccttcggttgccatcttcttcttcgtcagctacatcatcatctgcttcttgatcgtg
gtcaacatgtatatcgccgtcatcctggagaacttcagcgtggccacggaggagagcgcc
gagccgctgagtgaggacgactttgagatgttctacgaggtgtgggaacgcttcgacccc
gacgccacgcagttcatggagtatagcaagctctctgactttgccgacgccctggacccg
ccgctgcgcatggccaagcccaacatgctccacctgatctccatggacctgccgatggtg
agcggcgagcgcatccactgcctcgacatcctgtttgccttcaccaagcgggtgctcggc
gagagcggcgagatggacgtgctgcgcgggcaaatggaggaccgcttcatggcctctaac
ccgtcgaaggtgtcctacgagcccatcaccaccaccctgcggcgcaaacaggaggacatg
gcggccgtgattatccagcgagccttccggcgctacaagatccgcctggccatgaagaag
gcctccgccctctacaaggagcggctgaaggagggcatccacgaccccgacaaggacgtg
atggtcatcggaaagttccccgaaaactccacctctgagaaaacggacatgacaccctcg
acggcctcgccgccgtcctacaacagcgtgacaaaatcgtacaatgacaaatacgagaag
gaaaacagggaaaaagaaaacaaaggtagagacagaaagaaataa
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integrated database retrieval system
