Gasterosteus aculeatus (three-spined stickleback): 120833711
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Entry
120833711 CDS
T07457
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120833711 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gat03041
]
120833711 (sf3b1)
03036 Chromosome and associated proteins [BR:
gat03036
]
120833711 (sf3b1)
Spliceosome [BR:
gat03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
120833711 (sf3b1)
Complex B
120833711 (sf3b1)
Complex C
U2 SnRNP specific factors
120833711 (sf3b1)
Chromosome and associated proteins [BR:
gat03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
120833711 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
TPR_DNAAF5
HEAT_EF3_N
HEAT_MROH2B_C
HEAT_ECM29
TPR_IPO5
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
TPR_IMB1
VPS15-like_hel
Adaptin_N
Phage_T7_Gp15
UNC45-central
GST_N_4
Motif
Other DBs
NCBI-GeneID:
120833711
NCBI-ProteinID:
XP_040057026
LinkDB
All DBs
Position
XVI:16780136..16791369
Genome browser
AA seq
1319 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKATLLEEGDQGVGLDSTGFFDQEIYGGSDSRFDGYVTSI
AANEQEDDDEEDSSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPAKIAEREDEY
KARRRQMIISPERLDPFADGGKTPDPKLQGRSYVEVMLEQNLSKEEREIRLQMVEKAKAG
DLKVVNGSAASAAAAKRKRRWDQTADQTPTNTTPKKMSSWDQADSSAETPGHTPGHTPAH
TPSNSRWDETPGRAKGSETPGATPSTRMWDPTPSHTPAGAATPGRGDTPGHATPGHGGAT
GSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRWDETPASQ
MGSSTPLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPLTDDELD
AMFPEGYKVLPPPAGYVPIRTPARKLSATPTPIGGMTGFHMQVEDRTTKQMNDQPSGNLP
FLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKARE
FGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDE
DYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLL
PFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTIS
ALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYY
TREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMAL
DRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADID
HKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSA
KVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG
MHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLEL
LKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP
FTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHR
QTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCR
MLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDEKNMYVRYELDYAL
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacgcacgaagatatcgaggcccagatcctggagatccagggg
atgaaggcgaccctgctggaggaaggagatcagggagtgggcctcgattccaccggcttt
tttgaccaggagatctacggaggtagcgacagccgcttcgatggatacgtcacttccatc
gctgccaatgaacaggaagatgatgatgaagaggattcatcaacaagcttgttgggacaa
aaaaagccagggtaccatgcaccggtggcgatactcaatgccatccctcagtcagatgag
caatacgacccattcgcagagcatcgtccagcgaagattgcagagcgggaagatgaatac
aaagcccgacgcagacagatgatcatctcacccgagcgactcgaccccttcgcagatgga
ggcaaaacgccggaccccaagctgcagggcaggtcgtacgtggaagtcatgttggagcaa
aacctgtccaaagaggagagggagatccgcctgcagatggtagagaaggccaaagctggg
gacctgaaagtcgtcaacgggtccgctgcctccgcagctgccgcgaaacgcaagcgtcgc
tgggatcaaaccgcagaccaaacccccactaataccacacccaaaaagatgtccagctgg
gaccaggctgactcctctgctgagactccaggacacacccccggacacacccccgcgcac
accccctcaaacagccggtgggatgaaacccccgggcgcgcaaagggcagcgagacccca
ggggccactcccagcacccgcatgtgggaccccactcccagccacacacccgccggtgca
gccacccccggcaggggggatacgccgggccacgccacgcccggccatggtggagccacg
gggagcgtacgcaagaaccgctgggacgaaaccccgaagactgagagggagaccccggga
cacgggagcggctgggctgagacgccacgcacagacagaggggacgagtcggtgggcgag
acaccaaccccgggggccagtaagaggaagtcccggtgggatgagacccctgccagtcag
atgggatcctctacgccactgctgaccccaggaaagactcccatcggaacgccagctatg
aacatggctacaccgacgccaggtcacctgatgagcatgactcccgagcagctgcaggcg
tggaggtgggagagggagatcgatgagaggaaccggccgctcacagacgatgagctcgat
gccatgttcccagagggatacaaggttttgcctccaccagccggctacgtgccgatccgc
actccggcccgtaagttgtcggccacgccgacccccattggaggcatgacaggcttccac
atgcaggtggaggaccgcaccaccaagcagatgaacgaccagccctcaggaaacctgccc
ttcctcaaacccgatgacatccagtactttgacaaactgctggtggaggtggacgagtcc
acgctgagccccgaggagcagaaggagagaaagattatgaagctgctgcttaagattaag
aatggaacaccgcccatgagaaaggccgctctgcgtcagatcacagataaagcccgtgaa
ttcggagcaggcccgctgttcaatcagattctgccgttgctcatgtcgcccaccttggag
gaccaggagcgccatctgctggttaaagtcattgaccgcattctctacaaactggatgac
ttggttcgaccatacgtacacaagatccttgtggtgattgagcccctgctgattgatgag
gactactacgccagagtagaaggccgagaaatcatttccaacttggcaaaggctgccggt
ttggccaccatgatctccacgatgcgacccgatatcgacaacatggacgagtacgtcaga
aacaccacggcccgagcctttgccgtggtggcctccgccctgggcattccctccctcctg
ccttttctcaaagctgtgtgtaagagcaagaagtcctggcaggcccggcacacgggcatc
aagatcgtgcagcagatcgccatcctcatgggctgcgccattctgccccatcttcgcagc
ttggtagagatcatcgaacacggtctggtagacgagcagcagaaggtgaggaccatcagc
gccctcgctatagctgccctggctgaagctgctacgccctacggtatcgaatccttcgac
tccgtcctcaagccgctctggaagggcatcagacaacacagaggaaagggtctggctgct
ttcctcaaagctatcggctacctgatcccactgatggacgcagagtatgcgaactactac
accagagaggtgatgctgattctcatcagagagttccagtcccccgacgaggagatgaag
aagattgtactcaaggtggtgaagcagtgttgtggtaccgatggtgtggaagcaaactac
atcaagacggagatcctgcctcccttcttcaagcacttctggcagcacaggatggctctg
gaccgacgcaactacagacagttggtggacaccacagtggagttggccaacaaagtggga
gctgcagagatcatctctcgcatcgtcgacgacctgaaggacgaggcggagcagtacaga
aagatggtgatggagaccatcgagaaaatcatgggcaacctgggcgcggccgacatcgac
cacaagctggaggagcagctgatcgacggcatcctgtatgccttccaggaacagaccacc
gaggactccgtcatgctcaacggtttcggcacggtggtcaacgccctcgggaagcgcgtg
aagccctacctgcctcagatctgcggtacggtgctctggcgcctcaacaacaagtcggcc
aaagtccgtcagcaggccgccgacctgatctcccgtaccgccgtggtgatgaagacctgc
caagaggagaagctcatgggtcacttgggggtggtgctgtacgagtacctgggagaggag
taccccgaggtgttgggtagcatcctgggagcgctgaaggccatcgtcaacgtcatcggt
atgcacaagatgactccaccaatcaaagacctgcttcctcgtttgacccccatcctgaag
aacaggcacgagaaggtgcaggagaactgcatcgacctggtgggccgcatcgctgacagg
ggggctgaatatgtgtcggccagggaatggatgaggatctgtttcgagctgctggagctg
ctgaaggctcacaaaaaagccatccgcagagctacagtcaacacgtttggttacatcgcc
aaagccatcggaccccacgacgtcttggccactctgctcaacaacctgaaggtccaggag
cgtcagaaccgagtctgcaccaccgtggccatcgccatcgtcgccgagacctgttccccg
ttcacggtgctgccggcgctcatgaacgagtaccgcgtgccggagctcaacgtgcagaac
ggcgtgctcaagtccctctcctttctgttcgagtacatcggagagatgggcaaagactac
atctacgccgtcacgccgctgctggaggacgcgctcatggacagagatctggtccaccga
cagaccgccagcgccgtggtccagcacatgtctctgggcgtctacggtttcggctgcgag
gactccctcaaccacttgctcaactacgtgtggcccaacgtgtttgagacgtcgcctcac
gtgatccaggccgtcatgggcgccctggagggcctgcgggtcgcaatcgggccgtgccgc
atgctgcagtactgcttacagggtttgttccatccggccaggaaggtgcgagacgtctac
tggaagatttacaactccatctacatcggctcgcaggacgcgctcatcgctcactaccca
caggtctacaacgacgagaagaacatgtacgtccgctacgagctggactacgccttgtaa
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