Gordonia alkanivorans: C5O27_07200
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Entry
C5O27_07200 CDS
T05876
Name
(GenBank) B/F/G family RNA polymerase sigma-70 factor
KO
K03090
RNA polymerase sigma-B factor
Organism
gav
Gordonia alkanivorans
Brite
KEGG Orthology (KO) [BR:
gav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gav03021
]
C5O27_07200
Transcription machinery [BR:
gav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C5O27_07200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
KORA
HTH_IclR
HTH_23
MarR
HTH_24
HTH_Crp_2
Sigma70_ECF
GerE
HTH_3
DUF7343
HTH_10
Crp
HTH_26
MarR_2
HTH_Tnp_ISL3
YdaS_toxin
DUF134
UPF0122
Motif
Other DBs
NCBI-ProteinID:
AZZ80877
LinkDB
All DBs
Position
1573654..1574460
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AA seq
268 aa
AA seq
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MATQRAEHDDYSDVLPILREIRSERDDDLRAKKRDEVIERCLPLADHVARRFSDRGEPVD
DLRQVARIGLMHAVDRFDVDRGNSFLAFAVPTVMGEVKRYFRDSTWSIRVPRRAQEASLN
IAKASEELLQSLGRSPRPSEIAEHLGLPVGEVIEGMVARSAYTASSIDAEAGSSTDGWTL
ADTLGDEDERLDMVEEFVTLQPALARLTERERTILTLRFFRSMSQSEIARQIGISQMHVS
RLLTRILETLREEVADDEEYEEPLLKHA
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atggcgacacaacgcgccgagcacgacgattacagcgacgtcctcccgatactgcgagag
attcgcagtgaacgcgacgacgacctacgtgccaagaaacgcgacgaagtgatcgagcgg
tgcctaccgctcgcggatcacgtcgcacgccggttctccgatcgtggtgaaccggttgat
gatctgcgccaggttgcgcggatcggtctcatgcatgcggtcgacagattcgatgtcgat
cgtggcaatagtttcctcgcttttgccgtcccgacggtcatgggcgaggtcaagaggtat
ttccgtgacagcacgtggtcgatcagagtgccacgtcgtgcgcaggaggcctcgctcaac
atcgcgaaggccagcgaggaactcctgcagtccctcggacggtcgccgcggccgagcgag
atcgccgagcacctcggactaccggtcggcgaggtcatcgaagggatggtcgcgcggtcc
gcatacaccgcgagttccattgacgccgaagctggttcgtccacggacggctggactctc
gcggacacgctgggcgacgaagacgagcgcctggacatggtcgaggagttcgtcacgcta
cagccggcgcttgctcgactcaccgaacgcgaacgaacgatcctcaccctgcggttcttc
cgttcgatgtcccagagtgagatcgctcgccagatcgggatctcccagatgcacgtgtcg
cggctcctcacccggatcctcgaaactctgcgtgaagaggtcgccgacgacgaggagtac
gaggagccgctgctcaagcacgcgtga
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