KEGG   Candidatus Giovannonibacteria bacterium NC_groundwater_467_Ag_B-0.1um_47_26: HYW15_03280
Entry
HYW15_03280       CDS       T10159                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
gbg  Candidatus Giovannonibacteria bacterium NC_groundwater_467_Ag_B-0.1um_47_26
Pathway
gbg03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:gbg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    HYW15_03280
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gbg03021]
    HYW15_03280
   03400 DNA repair and recombination proteins [BR:gbg03400]
    HYW15_03280
Enzymes [BR:gbg01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     HYW15_03280
Transcription machinery [BR:gbg03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     HYW15_03280
DNA repair and recombination proteins [BR:gbg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      HYW15_03280
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2
Other DBs
NCBI-ProteinID: QQG42502
LinkDB
Position
complement(542744..546043)
AA seq 1099 aa
MGINKKYFSRYREPLASLPDLAEMQLKSFNWLLKTGIREILDEFSPIVDYTGEELALEFL
DYSFDEPKYDENYARVNNLSFESSLRIRIRLTNKRTGEKKEQEVFLADMPLMTPRGTFLI
NGVERVIVSQLARSFGAYFTLVNISKGRKLFGAKVIPSRGAWLEFETESDGAIYAKVDRK
RKIAATALMRIFGLEKNEDIKDAFSAIDNGEARLPDGQVSFINKTLEKDPTKTADDSYVE
IFKRIRQGELATPDNARELIGAMFGPERYDLSAVGRYKLGQRLPSLAGVKVKNPRILNKE
DLVAILSEVISLNNNPLSLPDDIDNLGNRRVRSVGEMLQQRLRIGLARMERTIKDRMSTS
DLATITPAQLLNARPFAAVISEFFMTNQLSQFMDQTNILSELEHKRRVSALGPGGLTRER
SGFEVRDVHPSYYGRLCPIMTPEGPNIGLINYLAGYARVNDFGILETPYRKVINGKVTNE
INYLTAFGEARHKIAQAGVAIGSEGNILDEEMEGRANGQPALIAKSEIDYIDVSPQQAFS
IATSLVPFLEHDDSTRAMMGSNMQRQAVPCVRPQAPLVATGMEEKAARDSGRLIMSDMDG
VVSAVDAKSVTVKSGRKTKTYELVNFVRSNQSTVIHQRPSVKLGDKIKKGDVLADTSLTD
RGHLALGQNLLVAFLSWGGANFEDAIILSDRLVKNDTFTSVLIEDYTVDVRDTKLGPEIT
THDIPNVGEEKLKDLDEDGIIRVGAEVRAGDILVGKISPKGESDLTPEERLLRAIFGEKA
RDVKDTSFRLPHGRHGRVVGIKVFSREKGDKLETGVIKEIRVEVAEMRKVSPGDKLAGRH
GNKGVISRILPQEDMPYLADGTPVDVILNPLGVASRMNIGQILETHLGWAAEKLGYMAIT
PTLLGATETEIKSELRRAGLPEDGKVRLFDGRTGKEFDQKVTVGMVYLMKLSHMVEDKLH
MRSIGPYSLITQQPLGGKAQGGGQRFGEMEVWALEGYGAAHTLQEMLTIKSDDVLGRAAA
YDAIVRGEPFRAPNVPASFHVLVNELKGLALDVELRGVEEAPGDEDESAGKESKGKGRQK
ERFEEYILEEEEKTWSRKK
NT seq 3300 nt   +upstreamnt  +downstreamnt
atgggaataaataaaaaatacttctcccgctatcgggagccgttggcctcgctgcccgat
ttagctgaaatgcagctgaaatcttttaattggctgctaaaaacagggattcgcgagatt
ctggacgagttttcgccaattgtagattacaccggcgaggaacttgccctggaatttctg
gattattcttttgacgagccgaagtacgacgaaaactacgccagagtcaacaacttgtct
tttgagtcatctttgagaatccgcattcggcttaccaacaagcgcacgggagaaaaaaag
gagcaggaagtatttttggcggatatgccgctcatgacaccccgcgggacttttttgata
aacggcgttgagcgcgtgattgtctcgcaactagcccgctctttcggcgcctactttact
ttggtgaatatttccaaaggcaggaagcttttcggcgcgaaagtcattccttcgcgcggc
gcctggctggagtttgaaacggaaagtgacggggctatttacgcaaaagttgaccgcaaa
agaaaaatcgccgccacagccctcatgcgcattttcgggttggagaaaaacgaggacata
aaagatgctttttccgccatagacaatggcgaggcccgcctgccggacgggcaggtttct
ttcatcaacaaaactctggaaaaagacccgactaaaacggccgacgactcttacgtggaa
attttcaaaagaatccgccagggcgagctggcaactcccgacaacgcccgcgagctcata
ggcgccatgttcgggccggagaggtacgatttgtcggccgtcggcagatacaagctcggc
cagcgcctgccttctttggccggtgttaaggtcaaaaacccgcgaattttaaacaaggag
gacttggtagccatactctcggaggtgatttctttaaataataatccattgtccctgccg
gacgacattgataacttgggcaaccgccgcgtgcgctcggtgggcgaaatgctccagcaa
agattgcgaatcgggctcgcgcgcatggagcggacgataaaagaccgcatgtccacctcc
gaccttgccacgattactcccgcccagcttttaaacgcccggccgttcgccgcagtgata
tccgaattttttatgacaaaccagctttcccaatttatggaccagacaaatattctttcc
gagcttgagcataagcgccgggtttcggctttggggccgggcgggctcaccagagaacgc
tccggatttgaggttcgggacgttcacccttcttactacgggcggctttgcccgattatg
acacccgaggggccgaacatcgggcttatcaactatctggccggatacgcgcgggtaaac
gatttcgggattttggaaacaccttacagaaaagtcataaacggcaaagtaacgaatgaa
atcaattatcttacggcttttggagaggcccggcataaaatcgcccaagccggagtcgcc
attggctcggaagggaatattttggacgaagaaatggagggccgtgccaatggccagccc
gcgctgatagcgaaatcggagattgattatatagacgtttctccccagcaagcgttttcc
atagccacttctctggtgccgtttttggagcacgacgactcaacccgcgccatgatgggt
tcaaacatgcagcggcaggccgttccctgcgtgcgcccccaggcgccattggttgccacc
ggcatggaagaaaaagccgcccgggattccggccggctgataatgtcggatatggacggc
gtggtaagcgcggttgacgccaaatccgtcacggttaaatcaggtcgcaaaacaaaaact
tacgaattggtgaatttcgtccggtctaaccagtcaacagtcatacaccagcgcccctcc
gtgaaattgggcgacaaaataaaaaaaggcgacgtgcttgccgatacttcgcttaccgac
cgcgggcatctggcgctcgggcagaatctccttgtggcttttctttcgtggggcggggcg
aattttgaggacgcaattattctttccgaccgtttggtaaaaaacgacaccttcacctcg
gttttgattgaggattatacggtggacgtccgggacaccaagcttgggccggaaatcacc
acgcacgacattcccaacgtcggcgaggaaaaactgaaggatttggacgaggacggcatc
atccgcgtcggcgcggaagtaagggccggcgacatacttgtggggaaaatctctccgaaa
ggcgaatccgaccttactccggaagagcggcttctgcgcgcgattttcggagaaaaagca
agagacgtaaaagacacttctttccgcctcccgcacggcagacacggccgcgtggtcggc
attaaagttttctcaagggaaaagggagacaaacttgaaaccggagtcatcaaagaaatc
agggttgaagtggcggagatgcggaaggtttctcccggcgataagctcgccggccgccac
ggcaacaagggagtaatttcccgcattcttccgcaggaagacatgccatacctcgcggac
ggcactccggttgacgttattttaaatcctttgggtgtcgcctcgcgcatgaacataggc
cagattttggaaacccatctggggtgggctgcggaaaaactgggctatatggcaataacg
cccactctgcttggggcgacggaaactgaaattaagtcggagcttagaagggcaggcctt
cccgaagacggcaaagttcggctttttgacgggcgcaccggaaaggaatttgaccaaaaa
gtcactgtcgggatggtttatttaatgaagctttcgcacatggtggaagacaagctccat
atgcgctcaatcgggccgtattctttgataacccagcagccgttggggggcaaagcgcag
ggcggagggcagagattcggcgagatggaggtctgggcattggaagggtacggcgccgcg
cacaccctgcaggaaatgctgaccataaaatcggatgacgttctggggcgcgcggcggct
tacgacgcgattgtgcgcggcgagccgttccgcgctccgaacgtcccagcgtctttccat
gtcttggtgaacgagcttaaggggcttgccctggacgttgagcttagaggggttgaagaa
gcgcccggcgatgaagatgaaagcgccggaaaagagtcaaaaggcaaggggcggcaaaaa
gagcgctttgaagaatatattttagaagaagaggaaaaaacatggagtcgcaaaaaatag

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