Granulibacter bethesdensis CGDNIH2: GbCGDNIH2_0548
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Entry
GbCGDNIH2_0548 CDS
T03083
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
gbh
Granulibacter bethesdensis CGDNIH2
Pathway
gbh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gbh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GbCGDNIH2_0548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gbh03021
]
GbCGDNIH2_0548
03400 DNA repair and recombination proteins [BR:
gbh03400
]
GbCGDNIH2_0548
Enzymes [BR:
gbh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GbCGDNIH2_0548
Transcription machinery [BR:
gbh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GbCGDNIH2_0548
DNA repair and recombination proteins [BR:
gbh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GbCGDNIH2_0548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
AHJ67575
LinkDB
All DBs
Position
627887..632062
Genome browser
AA seq
1391 aa
AA seq
DB search
MNAITQRDSKSFTGRKRIRKSFARIGDVVPMPNLIDVQRASYEAFLQMNVHPDNRTPTGL
QEVFRSVFPIDDFAGRGRLEFVNYELEEPKYDVEECIQRGMTFAAPLKVILRLIVWDVDE
DTGSRSIRDIKEQPVYMGDMPLMTDNGTFIINGTERVIVSQMHRSPGVFFDHDKGKTHSS
GKFLFAARVIPYRGSWLDFEFDSKDLVYVRIDRRRKLPVTTLLYALEGQRTEAAIASGTD
PQDLPEIHGMTAEEILSYFYTQVVFTSTPKGWARPFDPEAFRGITLAEALIDADTGTVVA
EAGTKLTARSARKIAEQAKTVLVGRADLLGRYMAEDLVNDQTGEIYAEAGEELTEARLAA
LETLGVTSLPTLAVDQTTGPWIRNTLAIDKNSTRDDALIDIYRVMRPGEPPTPETAEALF
RGLFFDMDRYDLSSVGRVKMNMRLGVDAPDTVRTLRKEDILRTVKILCDLKDGRGAIDDI
DNLGNRRVRSVGELMENQYRLGLLRMERAIRERMGSVDIDTVMPHDLINAKPAAAAVREF
FGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPE
GPNIGLINSLATYAKVNKYGFIETPYRMVEDGKVSDQWRYLSAMEEDRLVVAQADAPRDS
TGKLTEELISVRRQGDFRLVKPEDVTSMDVSPKQLVSVAAALIPFLENDDANRALMGSNM
QRQAVPLIRADAPLVGTGMEAAVARDSGATIVARRAGVVDQIDGARIVVRASGEDGATQG
VDIYRLRKFMRSNQSTCINQRPLVKVGDHVISGDIIADGPSTELGELALGRNVLCAFMPW
NGYNFEDSILISERIARDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALRNLDE
AGIVYIGAEVNPGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLKLPPGTTGT
IVDVRVFSRRGVDKDERAMAIERAEIERLAKDRDDERGIQERAFLNRLREKLMGHPASGG
FKGIKAGTIITDEVLAEHPRGAWRNISVQDDAVVADIELLKREFDAAVAKIQARFEGKVE
KLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVVSRVVPVEDMPFLEDGTPV
DLVLNPLGVPSRMNVGQILETHLGWACANLGRQIGELVEDYRRNGQQRDELLSRLREIYG
ENVYNDVIADMNNDQLIELAENLRKGVPIATPVFDGARPSDIENMLSRAGLDTSGQVVLT
DGRTGEPFERKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEM
EVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVRDQDSFEAGIPESFNVLMKELKSL
GLNVDLENRSA
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcaatcacccagcgggacagcaaatctttcaccggccgcaagcgcatacgcaaa
agtttcgcccgtattggcgatgttgtgccgatgcccaatctgattgatgtgcagcgcgcc
agttatgaagcgttcctccagatgaacgtgcatccggataaccggacgccgacgggcttg
caggaagtttttcgttccgtctttccgattgacgatttcgcgggtcgtggccgtctggaa
ttcgtcaattacgagttggaagagccgaaatacgatgttgaggaatgcattcagcgcggc
atgacctttgccgctcccctgaaggtcattctccgtctgatcgtgtgggatgtggacgaa
gataccggttcccgctctatccgcgacatcaaggaacagccggtttatatgggcgatatg
ccgctcatgaccgataacggcaccttcatcatcaatggcaccgagcgcgtcatcgtgagc
cagatgcatcgctctcccggcgtgttcttcgatcacgacaagggcaagacccattcaagc
ggcaagttcctgtttgctgcgcgcgttattccctatcgcggctcgtggctcgatttcgaa
ttcgacagcaaagatctggtctatgtccgcatcgaccgtcgtcgtaagctgcctgtcacg
acgctgctctatgcgctggaaggccagcggaccgaagcggcgatcgcatccggtaccgat
ccgcaggatctgcccgaaatccacggcatgaccgccgaggaaatcctgtcttatttctat
acgcaggttgtgttcaccagcacgccgaagggttgggcgcgtcctttcgatccggaagcg
ttccgtggcattactctggccgaagccctgatcgacgccgataccggcactgtcgtggcc
gaggccggcaccaagctgaccgcccgtagcgcccgtaagatcgccgagcaggccaagact
gttctggttggccgcgccgatctgctgggccgttatatggccgaggatctggttaacgac
cagaccggtgagatttatgccgaagccggcgaagaactgaccgaggcccgtctggccgct
ctggagactctgggcgtcaccagcctgccgactttggcggtcgaccagaccaccggtcca
tggattcgcaatactctggcgatcgacaaaaactctactcgtgatgatgcgctgatcgac
atctatcgtgtgatgcgccccggtgagccgccgaccccggaaacggcggaagccctgttc
cgtggcctgttcttcgatatggaccggtatgacctgtcttcggtcggtcgtgtgaagatg
aacatgcgtctgggcgtggatgccccggatactgtccgcaccctgcgcaaggaagatatt
cttcgcaccgtcaagattctgtgtgatctgaaggatggtcgtggcgcgatcgacgatatc
gacaatctcggcaatcgtcgcgtgcgttctgtcggcgagctgatggaaaatcagtatcgt
cttggcctgctgcgtatggagcgggcgatccgcgagcgcatgggctcggtcgatatcgac
acggtcatgccgcatgatctgatcaatgcgaagccggctgccgctgcggtgcgtgagttc
ttcggctcctcacagctcagccagttcatggaccagaccaatccgctctctgaagtgacg
cataagcgtcgcctctccgcgcttggtccgggcggtctgacccgcgagcgtgcaggcttc
gaggtccgtgacgttcatccgacccattatggccgtatctgcccgattgaaacgccggaa
ggcccgaatatcggtctgatcaactcgctggccacctatgccaaggtcaacaagtacggc
ttcatcgaaacgccgtaccgcatggtcgaggatggcaaggtcagcgatcagtggcgctat
ctttcagctatggaagaagaccgtctggttgtggcgcaggccgatgcgccgcgtgacagc
acaggcaagctgaccgaggaactgatctccgtgcgtcgccagggcgatttccgtctggtg
aagccggaagacgttacctcgatggacgtttcgccgaagcagctcgtttccgtggccgcg
gcgctgatcccgttccttgagaacgacgacgccaaccgcgcgctgatgggctcgaacatg
cagcgtcaggccgtgccgctgattcgcgcagatgcgccgctggttggcaccggcatggaa
gctgctgtggcgcgtgactctggcgctaccatcgttgcccgccgtgccggtgtggtcgat
cagatcgacggtgcccgcattgtggtccgtgccagcggcgaggatggagccactcagggc
gtcgatatttatcgtctgcgcaagtttatgcgctccaaccagagcacctgcatcaaccag
cgtccgctggtgaaggttggtgaccatgtgatttccggcgatatcatcgctgatggtccg
tcgacggagctgggtgaactggcgctgggccgtaatgtgctctgcgcgtttatgccatgg
aatggctacaacttcgaagactccatcctgatcagcgagcggattgcgcgggatgacgtc
tttacctcgatccatatcgaggaattcgaagtgatggcccgtgacaccaagctgggtcag
gaagaaatcacccgcgacattccgaatgtgggtgaagaagctctgcgcaacctcgacgaa
gccggtatcgtctatattggtgccgaggtgaatccgggtgacattctcgtcggtaaggtc
acgccgaagggcgaaagcccgatgacgccggaagaaaaactgctgcgcgccattttcggc
gagaaggcgagtgacgtacgcgacacctcgttgaagctgccacccggcacgaccggcacc
atcgtagatgtgcgtgtgttcagccgtcgaggcgtcgataaggatgagcgcgccatggcg
atcgagcgcgccgagatcgaacgtctggccaaggaccgtgatgacgagcggggcattcag
gagcgcgcattcctgaaccgtctgcgtgagaaactgatgggccatccggcttctggtggc
ttcaagggcatcaaggctggcacaatcatcaccgatgaggtcctggccgagcatccgcgt
ggcgcatggcgcaacatctccgtgcaggatgatgcggtggtcgccgacatcgaattgctg
aagcgtgagttcgacgccgccgtggccaagattcaggctcgttttgaaggcaaggtcgag
aagcttcagcgtggtgatgaactgccgccgggcgtgatgaagatggtcaaggtcttcgtg
gccgtgaagcgcaagcttcagccgggcgacaagatggcgggccgtcacggcaacaaaggt
gtggtcagccgcgtggttccggtcgaggatatgccgttcctagaggatggcaccccggtc
gatctcgtgctgaacccgctgggcgtgccgagccgtatgaatgtgggtcagattctggag
acccatctgggctgggcctgcgccaatctcggtcgtcagatcggtgagctggtggaggac
tatcgccgcaatggtcagcagcgggatgagctgttgtcccgcctgcgggagatctacggc
gaaaacgtctataacgacgtcattgccgatatgaacaacgaccagttgatcgaactggcg
gagaacctgcgcaagggcgtgccgatcgcaacgcctgttttcgatggcgcccgtccgtca
gatattgaaaacatgctgagccgggctggtcttgatacctccggtcaggtggtcctgacc
gatggccgcaccggcgagccgttcgaacgtaaggtgacggtcggttatatctatatgctg
aagctgcaccacctggttgacgacaagatccatgcccgctcgatcggtccttacagcctt
gtgacccagcagccgctgggtggtaaggcgcagttcggtggccagcgcttcggtgaaatg
gaagtgtgggcgctggaagcctacggcgccgcctacaccctgcaggaaatgctgacggtg
aagtccgatgacgtgtcgggccgcaccaaggtgtatgaggcgatcgtgcgtgaccaggat
agcttcgaggccggcattcctgaaagcttcaacgttctgatgaaggagttgaagtcactg
ggtctgaatgtcgaccttgaaaaccgctctgcctga
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