Citrifermentans bemidjiense: Gbem_0926
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Entry
Gbem_0926 CDS
T00749
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
gbm
Citrifermentans bemidjiense
Pathway
gbm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gbm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Gbem_0926 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gbm03021
]
Gbem_0926 (rpoB)
03400 DNA repair and recombination proteins [BR:
gbm03400
]
Gbem_0926 (rpoB)
Enzymes [BR:
gbm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Gbem_0926 (rpoB)
Transcription machinery [BR:
gbm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Gbem_0926 (rpoB)
DNA repair and recombination proteins [BR:
gbm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Gbem_0926 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
ACH37947
UniProt:
B5EFP3
LinkDB
All DBs
Position
1084862..1088977
Genome browser
AA seq
1371 aa
AA seq
DB search
MAYSIANNPLLRKNFAKIHKIIDIPNLIDIQKNSYKRFLQLDTPVDARKNSGLEAVFRSV
FPIRDFSDTASLEYVSYSLGAPKYDVEECHQRGMTFAAPMKVKVRLVVWDVAKDPGTRSI
RDIKEQEVYFGEIPLMTDNGTFIINGTERVIVSQLHRSPGVFYDHDKGKTHSSGKVLYSA
RVIPYRGSWLDFEFDHKDILYVRIDRRRKMPATVLLKALGYSNDALINYFYKSEEVKLGD
NGAMTKLADAELLSNQKATADIVDPATGEVILKANRKFTKAALRKMAEHGIKEIPISEEE
VVAKVASHDIYDPATGEIIVECNEELTQAKLEEIIQKGITTFQVLFIDNLHVTSSFRDTI
LIDKIGSTDEALIEIYRRLRPGDPPTLKSALVLFENLFFNAERYDLSAVGRLKLNYKLGV
DVPLDCMTLTREDILEVVRYLIELKNGKGNIDDIDHLGNRRVRAVGELLENQYRIGLVRM
ERAIKERMSLQEVENLMPHDLINSKPVSAVVKEFFGSSQLSQFMDQTNPLSEVTHKRRLS
ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIASLSTYARINEHGFVETPY
RVVSEGKVTDEVRFFSALEEEGHAIAQANAEIDKDGRFAADYISARKSGEFVLVGRDELE
LMDVAPMQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRADSPLVGTGMERVVARD
SGVSSVARHNGVVESVDASRIVVKIDEDQYDATGTGVDIYNLIKFARSNQNTCINQRPVV
KVGDHVKAGDIIADGPSTDMGELALGQNVLIAFMPWGGYNYEDSILISERLVKDDRYTSI
HIEEFEAVARDTKLGKEEITSDIPNLGEETLKDLDESGIIRIGAEVRPGDILVGKITPKG
ETQLSPEEKLLRAIFGEKAGDVRDTSLRVPPGVEGTVIGAKIFSRKGADKDARTEIIEKA
EEMRLRKDEQDEIRIIRDSAIGKLKKLLVGKAAAVKIEGSDGKVLIPKGAAITEEMLKSF
SMDRWDEISIADDDTIDEKVAQTLSTLNQQIDIIKYVFDDKVQKLRRGDDLPPGVIKMVK
VYIAIKRKLQVGDKMAGRHGNKGVVSRILPEEDMPYMEDGRPVEIVLNPLGVPSRMNVGQ
ILEMHLGWGAKGLGWKIEEFLEKNAPHDEIKRFLKGAYDNPEMDRFLDTLEGEELLNLAR
RLKRGIPMSSPVFEGASEESIQSMLTHAGFSTTGQVTLYDGKSGDKFMHQVTVGIMYFLK
LHHLVDDKIHARSIGPYSLVTQQPLGGKARFGGQRLGEMEVWAMEAYGAAYALQEFLTVK
SDDVAGRTRMYEAIVKGKHTLEPGLPESFNVLIKELQSLGLDVELLEGDED
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atggcttattcaatcgcgaataaccccctgttgcgcaagaacttcgccaagatccacaag
atcatcgacataccgaacctcatcgacatccagaaaaattcctacaagagattcctccaa
ctagacactcccgtagacgcacgcaaaaattccggcctcgaagccgttttccgcagcgtc
ttcccgatcagggacttcagcgacaccgcctcgcttgagtacgtttcgtattcgctcggc
gcgcccaagtacgacgtggaggagtgccaccagcgcggcatgaccttcgcggccccgatg
aaggtgaaggtgaggctggtggtgtgggatgtggcgaaggaccccggtaccagatcgatc
cgcgatatcaaggagcaggaggtttatttcggcgaaatcccgctgatgaccgacaacggg
acctttatcataaacggcaccgagcgcgtcatcgtgagccagctgcaccgctctccgggc
gttttctacgaccacgacaaagggaagacccactccagcggcaaggtgctctactccgct
cgcgtgattccgtaccgcggctcgtggcttgactttgaatttgaccataaagacatcctt
tatgttcgcatagacagacggcgcaagatgccggccaccgtgctcctcaaggcgctcggc
tactccaatgacgcgctgatcaactacttctacaagtccgaagaggtaaagctcggcgac
aacggcgccatgaccaagctcgccgacgctgagcttctctcgaaccagaaggctaccgct
gacatcgtcgacccggctaccggcgaggtgatcctcaaggcgaaccgcaagttcaccaag
gcggcgctcaggaagatggccgagcacgggatcaaggagatccccatctccgaggaggag
gtggttgcaaaggtcgcttcgcacgacatctacgacccggctaccggcgagatcatcgtg
gagtgcaacgaggagctcacccaggccaaactcgaggagatcatccagaaggggatcacc
accttccaggtgctcttcatcgacaacctgcacgtcacctccagcttccgcgacaccatc
ctgatcgacaagatcggctccaccgacgaggcgctgatcgagatctaccgccgtctgcgt
ccgggcgacccgccgacgcttaagagcgcgctggttctcttcgagaacctgttcttcaac
gcggagcgctacgacctctccgccgtcggccgcctgaagctcaactacaagctgggcgta
gacgtgccgcttgactgcatgacgctcacccgcgaggacatcctcgaggtggtgcgctac
ctgatcgagctgaaaaacggcaaggggaacatcgatgacatcgaccacctgggcaaccgt
cgtgtccgcgccgtgggcgagcttttggaaaaccagtaccgcatcggcctggtcaggatg
gagcgcgccatcaaggagcgcatgagcctgcaggaagtcgagaacctgatgccgcacgac
ctgatcaactccaagccggtctccgcagtagtgaaggagttcttcggctcctcgcagctc
tcccagttcatggaccagaccaacccgctctccgaggtcacgcacaagcgccgtctctcg
gctctgggaccggggggcctaacccgcgagcgcgcgggcttcgaagtccgcgacgtacac
ccgacccactacggccgcgtctgcccgatcgagacccctgagggtccgaacatcggtctc
atcgcgtcgctctctacctacgcaaggatcaacgagcacggcttcgtcgagacgccgtac
cgcgtggtcagtgaagggaaggtgaccgacgaggtccgcttcttctcggctctcgaggag
gaagggcacgccatcgcccaggccaacgccgagatcgataaagacgggcgcttcgcagct
gactacatctcggccaggaaatccggcgagttcgtcctcgtgggacgcgacgagctggag
cttatggacgtggccccgatgcagctggtttccgtcgcggcatcgctgatcccgttcctc
gagaacgacgacgcgaaccgcgcactgatgggttccaacatgcagcgccaggccgttccg
cttctgcgcgccgactctccgctggtaggaaccgggatggagcgcgtcgtcgcacgcgac
tccggtgtttcctcggttgcccgccataacggggtggtggagagcgtcgatgcctcccgc
atcgtcgtcaaaatcgacgaggatcagtacgacgcgaccggcaccggcgtcgacatctac
aacctgatcaagttcgcccgctccaaccagaacacctgcatcaaccagaggccggtggta
aaggtaggcgaccacgtgaaggctggcgacatcatcgccgacggcccctccaccgacatg
ggcgagctggctctggggcagaacgtgctgatcgcgttcatgccgtggggcggctacaac
tacgaggactccatcctcatctcggagcgcctggtaaaagacgaccgctacacctcgatc
cacatcgaggagttcgaggccgtggcccgcgacaccaagctcggcaaggaggagatcacc
tccgacatcccgaacctgggcgaagagaccctgaaggacctggacgagtcgggcatcatc
aggatcggcgctgaagtccgtccgggcgatatcctggtcggcaagatcactccgaagggc
gagacccagctctccccggaagagaaactcctgcgcgccatcttcggcgagaaggcgggc
gacgtgcgcgacacctcgctgcgcgtaccgccgggggtggaaggtaccgtcatcggtgcc
aagatcttctcccgtaagggtgccgacaaggacgcccgtaccgagatcatcgagaaggcc
gaggagatgcggcttcggaaagacgagcaggacgagatccggatcatccgcgattcggct
atcgggaagctgaagaaactgctggtgggcaaggccgccgcagtgaagatagaagggagc
gacggcaaggtgctgatcccgaaaggggcggccatcaccgaggagatgctgaaatcgttc
tccatggaccgctgggacgagatctccatcgccgacgacgacaccatcgacgagaaagtg
gcccagacgctctccacgctgaaccagcagatcgacatcatcaagtacgtcttcgacgac
aaggtgcagaagctgcgccgcggcgacgatctgccgccgggcgtcatcaagatggtcaag
gtctacatcgccatcaagcgtaagctccaggtgggcgacaagatggcgggccgccacggt
aacaagggtgtcgtttccaggatcctcccggaagaggacatgccgtacatggaagacggc
cgtccggtagagatcgtgctgaacccgctgggcgtaccttcccgtatgaacgttgggcag
atcctcgagatgcacctcggctggggcgccaaggggctcggctggaagatcgaggagttc
ctcgagaagaacgccccgcacgatgagatcaagaggttcctgaagggggcgtacgacaac
ccggaaatggaccgcttcctcgatactctggaaggtgaggagctcctcaacctggcacga
cgcctgaagcgcggcatccccatgtcgtcgccggtcttcgagggtgcgagcgaggagtcg
atacagtcgatgctgacccatgcaggcttcagcaccaccggtcaggtcaccctctacgac
ggcaagagcggcgacaagttcatgcaccaggtcaccgtcgggatcatgtacttcttgaag
ctgcaccacctggtcgacgacaagatccacgcgaggagcatcgggccctactctctggtc
acccagcagccgctggggggcaaggcgcggttcggcggtcagaggctcggggagatggag
gtctgggcgatggaggcctacggcgccgcatacgcgctgcaggaattcctcaccgtcaag
tccgacgacgtggccggccgcaccaggatgtacgaggccatcgtcaaagggaagcacacc
ctggagccgggcctgcccgagtcgttcaacgtcctcatcaaggaactccagtcccttggc
ctcgacgtggaactcctggaaggcgacgaggactaa
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