Citrifermentans bremense: GEOBRER4_39110
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Entry
GEOBRER4_39110 CDS
T07006
Name
(GenBank) hypothetical protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
gbn
Citrifermentans bremense
Pathway
gbn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gbn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
GEOBRER4_39110
09124 Replication and repair
03420 Nucleotide excision repair
GEOBRER4_39110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gbn03021
]
GEOBRER4_39110
03400 DNA repair and recombination proteins [BR:
gbn03400
]
GEOBRER4_39110
Enzymes [BR:
gbn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
GEOBRER4_39110
Transcription machinery [BR:
gbn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
GEOBRER4_39110
DNA repair and recombination proteins [BR:
gbn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
GEOBRER4_39110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
ATPase
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
BCG49161
UniProt:
A0A6S6MCB0
LinkDB
All DBs
Position
complement(4438335..4440731)
Genome browser
AA seq
798 aa
AA seq
DB search
MKPAPTIINIPVGDFALPVPRTGSIEARSGHDRSSAEGREIHLRVQKKRAQADPSYQAEV
PVSRVFERGGFQFQVNGRLDGIFRRDPPCIEEIKSCFNLWELKRRLSSSGMDEPYSLQLL
TYGYFHWLEHGVVPGLSFHLVSSRNGACEDLPVQLDLEAYRVWLELRLDQLALEAAEAAK
RAHRRRKAAKNFPFPFAAPRPGQLELMGEIERGMVEGRPMLIQAPTGLGKTAGVLHPVLK
QALERGQTVCYVTPKNSQHEVAEDAMERFRDAGVRLRSLTVTAKGRICFMNEPICTPEYC
EYARDYYGKLARHGVVELMARKRKLKAGTFRELGEKYQVCPFELQIEAVPMADLVICDYN
YVFAPRSALGRAASLAVEQAGKPNLVIDEAHNLPSRAMDYYSPRLSSQLLEGMRGELAEL
PKPFRRDALELLEQCLAAVAACCGGGKGGRPARIEPPVAPFLELDARLRALLSRYLEAEV
EIRQKDPVLRLCHYWGEFAEILEFAAGSKRQEFFTSCEPGPGGGSVKITCCDASALISDR
YAEYQQVVAFSATLKPFEYYAKLSGLDPGVVRCAEFQSPFPSWLRKLMIIPQVSTRYSQR
ERNYDRIAEVLARVVALKSGNYLAFFPSFVFLERVAELFQAPEGVEVLLQERKMSRARVS
EILERLRAGDAPTLVFAVQGGSLSEGVDYAGEMVIGAFVVGPPLPNFDLEREEMRGYYQR
NYGNGYQYAYTIPAMAKAIQAAGRVIRSETDRGLIVLMDDRFLQQEYSSAMPSDWFESGA
NELVSGAILSDIREFWGQ
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgaagcctgcacccactatcatcaacatcccggttggggatttcgcccttcccgttccc
cgcacagggagcatcgaggcgcgttccggccacgaccgcagcagcgcggaggggcgcgag
atccatctccgggtccagaaaaaacgggcgcaggcggatcccagctaccaggccgaggtg
ccggtcagccgcgtcttcgaaaggggagggttccagttccaggtgaacggccgtctggac
ggcatcttccggcgggaccccccatgcatcgaggaaatcaagagctgcttcaacctgtgg
gagctaaaacgcaggctctcgtcttccggcatggacgagccgtactcgctgcagcttctc
acctacggctacttccactggctggagcacggcgtggtgccgggcctctcctttcatctc
gtttcctccagaaacggcgcctgtgaggacctcccggtgcagcttgatctggaggcgtac
cgggtttggctggagctgcgcctggaccagctggcgctggaagccgcagaggcggccaaa
cgcgcccacaggaggaggaaggcggccaaaaacttcccctttccctttgctgccccccgt
cccgggcagcttgagctgatgggggaaatagagcgcggcatggtggagggacgccccatg
ctgatccaggcgccgaccgggctcgggaaaaccgcgggggtgttgcacccggtgctaaag
caggcgcttgagcgcggtcagaccgtttgctacgtgacgccgaaaaacagccagcacgag
gtggcggaggacgccatggagcgcttccgcgacgcgggggtgcggctgcgttcgctcacc
gtgaccgcgaaggggaggatctgtttcatgaacgagccgatctgcacccctgagtactgc
gagtacgcgcgcgactactacgggaagctggcacggcacggcgttgtggagctcatggcc
aggaaaaggaagctgaaggcggggaccttccgggaactgggtgagaagtaccaggtttgc
cccttcgagctgcagatcgaggcggtgccgatggcagatctggtgatctgcgattacaac
tacgtcttcgcccccaggtccgcgctggggcgggccgcctcacttgccgtggagcaggcc
gggaagccgaacctggtgatagacgaggcccataacctcccatcgcgcgccatggattac
tactcccccaggctctccagccagcttctggaggggatgcggggcgagctggcggagctt
cccaagccattccggcgcgacgccctggagcttttggagcagtgcctggcggcggtggcg
gcctgctgcgggggcggcaagggtggtcgcccggcgcggatagagccccctgtcgcccct
ttcctggagttggacgctaggctgcgggcgttattgtcgcgctacctcgaggcggaggtg
gagatccggcaaaaggacccggtgttgaggctttgccattactggggggagtttgccgag
atcctcgagtttgcagcaggctccaagcggcaggagtttttcacctcctgcgagccgggt
cccggcggggggagcgtcaagatcacctgctgcgacgcctccgccctgatttcggaccgc
tatgcggagtaccagcaggtggtcgctttctcggcgaccctgaagccgttcgagtactac
gcgaagctttccgggctcgaccccggggtggtgcgctgcgcagagttccagagccccttt
cccagctggctgcgcaagctgatgatcatcccgcaggtctcgaccaggtactcgcagcgc
gagcgcaattacgaccggatcgcggaggtcctggcccgggtggtggcgctgaaaagcggc
aactacctcgcctttttcccgagcttcgtcttcctggagcgggtggcggagctcttccag
gcgccggaaggggtcgaggtgctgctccaggagaggaagatgagcagggcgagggtatcc
gagatcctggagcggctgcgcgccggggacgccccgacactggtcttcgcggtccagggg
ggctctctttccgagggggtggattacgcgggagagatggtgatcggagctttcgtggtc
gggccgccgctgcccaacttcgacctggagcgggaggagatgagggggtactaccagcgc
aattacggcaacggctaccagtacgcctacaccatcccggccatggccaaggcgatccag
gcggcggggcgggtgatccgctcggaaacggaccgcgggctcatcgtccttatggacgac
cgtttcctgcagcaggagtacagcagcgccatgccgagtgactggttcgaatcgggggcc
aacgagctggtctccggagccatactgagcgacatcagggaattttggggacagtga
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