Gymnogyps californianus (California condor): 127018133
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Entry
127018133 CDS
T08687
Name
(RefSeq) collagen alpha-2(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
gcl
Gymnogyps californianus (California condor)
Pathway
gcl04510
Focal adhesion
gcl04512
ECM-receptor interaction
gcl04518
Integrin signaling
gcl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gcl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127018133
04518 Integrin signaling
127018133
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127018133
09142 Cell motility
04820 Cytoskeleton in muscle cells
127018133
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gcl04147
]
127018133
00536 Glycosaminoglycan binding proteins [BR:
gcl00536
]
127018133
Exosome [BR:
gcl04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
127018133
Glycosaminoglycan binding proteins [BR:
gcl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127018133
Hyaluronan
Extracellular matrix or blood plasma proteins
127018133
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
127018133
NCBI-ProteinID:
XP_050755471
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Position
7:complement(635344..664386)
Genome browser
AA seq
1019 aa
AA seq
DB search
MFRQAFFSTLLCVALVPLHAQLDGDPGEVSPTSCTEKRNCPINVYFIIDTSESVALQTVP
IQSLVDQIKRFIPVFIDKLESELYQNQVYITWQFGGLHYSDVVEIYSPLTSSKDIYLPKL
SAINYLGRGTFTDCAISNMTEQIQTQMASGVNFAIVITDGHVTGSPCGGMKVQAERARDM
GIKLFAVAPSENVYEQGLREIANLPHELYRNNYAITQKDTLDVDVNTIERIIQAMKHEAY
GECYKMSCLELAGPPGPKGYRGQKGAKGNMGEPGSPGLKGRQGDPGIEGPIGYPGPKGVP
GLKGEKGEIGSDGRRGAAGLAGRNGTDGQKGKLGRIGPPGCKGDPGDKGPDGYPGDAGDQ
GERGDEGIKGDPGRPGRSGPLGPPGEKGSPGLPGNPGAQGPTGSKGTKGEAGPPGPKGEP
GRRGDPGAKGSKGTPGAKGERGDPGPEGPRGLPGEVGSKGARGDQGLPGPRGPSGAVGEP
GKIGSRGDPGDLGPRGDAGPPGPKGDRGRPGFSYPGPRGPQGDKGEKGQPGPKGVRGELG
PKGAQGTKGEKGEPGDPGSGGEPGPRGPTGEAGPEGTPGPPGDPGLTDCDVMTYVRETCG
CCDCEKRCGALDIMFVIDSSESIGYTNFTLEKNFVVNVVSRLGSIAKDPKSQTGARVGVV
QYSHEGTFEAIKLDDERIDSLSSFKEAVKRLEWIAGGTWTPSALQFAYNKLIKESKREKA
QVFAVVITDGRYDPRDDDKNLGALCGRDVVVNTIGIGDMFDQPEQSETLVSIACNEPQRV
QKMRLFSDLVAEEFIDKMEDVLCPDPQIVCPELPCQTELAVAQCTQRPVDVVFLLDGSER
IGEQNFHRAHHFVEEVARQLTLARSNSDNMNARIALLQYGSERDQDVVFPLTYNLTEISN
ALAQIKYLDSSSNIGSAIIHAINNIVLSPGDGQRLARRNAELSFVFITDGITGSKNLEEA
INSMKKQDVMPTVVALGSDVDMDVLLKLGLGDRAAIFREKDYDSLSQPSFFDRFIRWIC
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgttccgacaagcctttttttccactctcctttgtgtggctctagttcctctccatgct
cagctcgatggggatcctggagaagtcagccctacctcctgcacagaaaagaggaactgc
cccatcaatgtgtacttcatcattgacacctcagagagcgttgctctgcagactgtgcct
atccagagcctcgtggatcaaataaagcggttcatccctgtgttcatcgataaactggag
agtgagctctaccagaaccaagtctacatcacttggcagtttggtggacttcattactcg
gatgtggtggaaatttacagccctttaacgagcagcaaagacatatacctccccaagctg
tccgctattaactaccttggccggggcaccttcacggactgcgctatctccaacatgacg
gagcagatccagacccagatggcctcgggtgtgaactttgcgatagtcatcactgatggc
catgtcactggcagcccctgcggggggatgaaggtgcaggctgagagggcgcgagacatg
gggatcaagctcttcgcagtggcccccagcgagaacgtctacgagcagggactgcgggag
atcgccaacctgccgcacgagctgtaccgcaacaactacgccatcacacagaaagacacc
ctggacgtcgatgtgaacaccatcgagaggataatccaagctatgaaacacgaagcctac
ggagagtgctacaagatgagctgcctggagcttgcaggtccacctggtcccaagggatac
cgagggcagaagggtgcaaaggggaacatgggtgagccaggctcccctgggctgaaggga
cgacagggtgacccaggtattgaaggtccgatcggataccctgggcccaagggtgtccca
gggctgaaaggagagaagggcgagattggatccgatggaaggaggggtgccgctggtttg
gcaggcaggaatggtaccgatggacagaagggcaagctggggagaattggaccaccgggc
tgcaagggagaccccggtgacaagggccctgatggctacccaggagatgcaggagaccaa
ggtgaaagaggagatgaaggcataaagggagatcctggccggcctggtcgcagcggaccc
ctgggacctccaggagaaaaaggaagcccgggacttccaggcaaccctggagctcaaggg
cctactggaagcaagggaacaaaaggtgaagcgggacctcctggacccaaaggagagcct
ggtcgacgtggagatccgggggcgaaaggcagcaaaggcactcctggggccaaaggagaa
aggggagatcccggtccagagggtcctcgtggcctgcccggcgaggttggaagcaaagga
gcaaggggagaccaaggactgccaggaccccgaggcccttcaggtgctgtgggagagcca
ggcaagataggatcgcgtggggatcctggtgacttgggcccaagaggtgacgccggacca
ccaggaccaaagggtgacagaggcagacctggctttagctaccctggacccagaggaccg
cagggtgacaagggtgagaaggggcagccaggacccaagggagtaagaggtgagcttgga
ccaaaaggagcgcaagggaccaaaggagagaagggggaaccgggtgatcctggctcagga
ggggagcctggaccccgcggtccaactggtgaagcaggccccgaggggacccctggccca
ccaggagatcctggtctgactgactgcgatgtgatgacctacgtgcgagagacgtgcgga
tgctgtgactgtgagaagcgctgcggtgccctggacatcatgtttgtcatagacagctcg
gagagtattggctacaccaacttcaccctggagaaaaattttgttgtcaatgtggtcagc
cggctgggctctattgccaaggaccccaagtcgcagacaggtgcccgtgttggggtggtg
cagtacagtcacgaggggaccttcgaagccatcaagcttgatgatgagcgcattgattca
ctgtcgagcttcaaggaagcagtgaagcgcctggagtggattgctggaggcacctggaca
ccatctgcccttcagtttgcctacaacaagctcatcaaggaaagcaagcgagagaaagcc
caagtgtttgctgtggtgatcacggatgggcgctacgacccccgggatgacgacaagaac
ctaggggctctttgcggtagagatgtggtcgtcaacaccattggcattggagacatgttt
gatcagccagaacagagcgagaccctggtctccatcgcctgcaatgaaccccagcgagtc
cagaagatgaggctcttctcagacctggtggcagaggaattcattgacaagatggaggac
gtgctctgcccagatccacagatcgtctgccctgagctgccctgtcagacagagcttgca
gtggcccagtgcacacagcgccccgttgacgtcgtcttcttgcttgatggctctgaaagg
atcggggagcagaatttccacagggcccaccactttgtggaggaggtggcccgacagctc
acactggccaggagcaacagcgacaacatgaatgcccggattgcgctgctgcagtacggc
agtgagagggaccaggatgtggtcttcccactgacctacaacctgacggaaatctccaac
gccctggcgcagatcaagtacctggactcatcttccaacatcgggtcagccatcatacat
gccatcaacaacatcgtgctcagcccgggagacgggcagcgactcgcccggcgcaatgct
gagctctccttcgtcttcatcactgacggcatcacaggaagcaagaacctcgaggaggcc
atcaactccatgaagaagcaagacgtcatgcccacagtagtggctcttgggagtgacgta
gacatggatgtcctgctgaagcttggcctcggggaccgggcagccatcttccgggagaag
gactatgacagcctctcccagcccagcttcttcgacaggttcattaggtggatatgttaa
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