Gymnogyps californianus (California condor): 127021346
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Entry
127021346 CDS
T08687
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
gcl
Gymnogyps californianus (California condor)
Pathway
gcl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127021346
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gcl03019
]
127021346
Messenger RNA biogenesis [BR:
gcl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127021346
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127021346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
127021346
NCBI-ProteinID:
XP_050760294
LinkDB
All DBs
Position
12:22185065..22239260
Genome browser
AA seq
2384 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQNF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQQAWATDDVAQIYDKCMTEL
EQHLQSIPHTLAMNPQAQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADAD
LLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNM
QQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSR
GNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREW
VNLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYR
AQAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVG
VLLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAP
GFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILY
KGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKV
DMLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNI
QLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIAN
QLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKN
PAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7155 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaataggcacggt
cccgaggcagacaggcatttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagactcaatttctgatccaggagtgtgcgtcg
ctgattacaaaaccaaactttatctcgacgctgtcctacgccattgacaatccgttgcac
tatcagaagagtctaaagccttcaccccatttatttgcccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtgatttttggtcttgctttactgaactctttcagctcagat
ctacgaggttttgctgcccagtttatcaaacagaaactcccggatcttttgcgctcttac
attgacgcggacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctcctttttgggcagaagggagcctttggggtaggacag
gaacagattgacgctttcctcaaaacattacgtagagattttccccaggagcgttgccct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaaccatgatggagagttctctggcagatttcatgcaa
gaagttggctatggcttttgtacaagtgtcgaagaatgtcgcaacataatcatgcagttt
ggtgttcgggaagtcacggctgcccaggttgccagggttttggggatgatggctcgaact
cattcggggttgacggatggtattccattacaatctatttcggctcctggcagtgggatt
tggagtgatgggaaagataaaagtgatggagcacaagcccatacctggaatgtggaggtc
ttaattgacgttcttaaagagctgaatcctagcctggacttcaaagtagtaacctatgaa
ttggaccatccgggatttcagattcgtgacagcaagggcctgcatattgtggtgtttggc
atccagagagggctgggcatggaagtttttccagttaatgccatatacagaccttggaag
catgcagagggccagctctccttcattcaacattccctcataaaccctgacatcttctgt
tttgctgactacccttgtcatactgttgccacagacatcctgaaagcaccaccagaggat
gacaatcgagaaattgctacatggaagagcctggatttgattgaatctctgttacgattg
gcagaagtgggacagtatgagcaggttaagcagctcttcagttttcctatcaagcattgc
ccagatatgttggtattggccttattgcagatcaacacgtcctggcataccttgcgccat
gaactcatctccacgctcatgccaattttccttggcaaccatcccaactctgccatcatt
ttgcactatgcatggcatggacagggtcaatctccttcgattcgtcagcttatcatgcac
gcaatggcagaatggtacatgagaggggagcagtatgaccaggcgaaattgtcacgtatt
cttgatgtggcgcaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggagcccttcatccaggcctgtatgactttctta
aagagaagatgtccatctatcctgggtggccttgctccagaaaaagatcagcccaaaagt
gctcagcttcctccagaaaccttggcgactatgttggcatgtctgcaagcttgtgctggg
agtgtttctcaggagctgtcagagacgatcctcaccatggtagctaactgcagcaatgtc
atgaacaaggctagacagccaccacctggagtcatgccaaaaggacgcccgcccagtgct
agcagcctggatgccatctctcctgtacagatcgactcgcttgcaggaatggcatctctt
agtttaggtggctcagctgctcctcatacccagagcatgcaaggcttccctccaaacttg
ggctctgcattcagtactcctcagtcaccagcaaaagcgttcccccctctttccacccaa
aaccagacaacaggtttcagtggcatcggaggactctcttcacagcttccagtaggtggt
cttactacgggtagcctgactggcataggaactggagccctgggccttcctgcggtgaac
aatgacccattcgtgcaaaggaagctgagcacatctggactgaaccagcctacattccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaatcagaacttt
agcaaagaaatagatgatgaggcaaacagctacttccagcgtatttacaaccatccacca
catccgaccatgtctgtagatgaggtcttggaaatgctgcagaggtttaaggactccaac
attaaacgggaacgagaagtgtttaactgtatgctgaggaacttgtttgaggaataccgt
ttctttccccagtacccagataaagagctgcacataacagcctgcctctttggtgggata
atagagaaaggactggttacttatatggcattgggcctggccctgcgctatgttcttgaa
gccttacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagttcccgcatcatttacaggagtacatagaatatggacagcaatccagagat
cctcctgtgaagatgcagggttcaatcaccacccctggaagtattgcacttgcccaggct
caggcccaggcccaagttccagcaaaagctcctcttgctggccaagtcagcactatagta
accacctcaaccaccaccactgttgcaaaaaccattacaatcacccgaccaactggagtc
agcttcaagaaggatgtgccgccttccattaatactaccaacattgatacgctgttagta
gcaacagatcaaactgagagaattgtggaacctccagagaatgtgcaggaaaaaattgct
ttcatcttcaataatctgtctcagtcaaatatgacacagaaggttgaagaattgaaggaa
acagtgaaagaagagttcatgccttgggtatcacagtaccttgtgatgaagagagtcagt
attgagcctaattttcacagcttgtattcaaacttccttgacacacttaagaatccagag
tttaataaaatggttctgaatgaaacctacagaaatatcaaggtgctactgacatcagat
aaagctgcagccaacttctcagaccgttccttgttaaagaaccttggtcactggctggga
atgattacgctggctaaaaataagcccatcttgcacacggatttggatgtgaaatcgcta
ctactggaagcatacgttaagggacagcaggaattgctttatgtagtgccatttgttgcc
aaagtcttagaatccagtgtcagaagtgtggtcttcaggcctccaaacccgtggacaatg
gccattatgaatgttttagctgagctacatcaagaacatgatctaaaattgaatctgaag
tttgagattgaggtgctctgcaagaatcttgcactagacatcaatgagctgaaacctgga
agtctcctgaaagataaggatcgtctgaaaaatctggatgagcagctgtctgctccaaag
aaggatgtgaagcagccagaagagctaccacccatcacaacaactactgcttctacaact
ccagctaccagcaccacttgtacagccacagttcctccacagccccagtacagttaccac
gacatcaacgtctattctttaggagggttggctccacatattaccttaaatccaacgatt
ccgctgtttcaagcccacccgcagttgaagcaatgtgtgcggcaggcgatagagcgagca
gtgcaagagcttgtccatcccgtggtcgatcggtccattaagattgccatgactacttgt
gagcagatagtcaggaaggactttgcactggattcagaggagtcacgaatgcgtgtggcc
gcacaccatatgatgcggaacctgactgctgggatggccatgattacctgcagggaacct
ttgctgatgagcatagctaccaacttgaaaaatagttttgctacagcattgagggcagcc
tccccacaacagagggacatgatggagcaagcagctgcccagttagcgcaggataactgt
gagctggcatgctgctttatccagaagacggctgtggaaaaggcaggccctgagatggac
aagaggctcgcaactgaatttgagctcagaaaacacgctagacaggagggtcgtcggtac
tgtgatcctgttgtgttaacttaccaggctgagcggatgccagaacagatccggttaaag
gttggaggtgtggacccaaaacagctggctgtttatgaagagtttgcacgcaatgtccct
ggcttcttgcctaccaatgacctaactcagcctacaggattcttggctcagcctatgaag
cagcaagcttgggctacagatgatgtagcacaaatctatgacaaatgtatgacagaactg
gagcagcacctgcagtccattccacacaccctggccatgaatcctcaagctcaagcgttg
cgcagcctcttggaggctgtggtggtagctcgtaactcccgtgatgctattgctgcactt
ggcctactgcagaaggctgtagagggcttactggatgccaccagtggggcagatgctgac
ctcctgcttcgctatcgtgagtgtcatctgcttgtgctgaaggcgctgcaggatggccgc
gcgtatggatctccgtggtgtaataaacaaattactaggtgcctgattgaatgcagagat
gagtacaagtacaacgtggaagctgtggagctgctaatccgcaatcaccttgttaacatg
cagcagtatgaccttcacttggctcagtcaatggagaatggcttgaactacatggctgtg
gcatttgccatgcagttggtaaagatcctgttggtggatgagagaagtgtcgcccacgta
acagaggcagatctgtttcacacaattgagacactcatgaggattaacgctcattccaga
ggaaacgccccagaaggattaccccagctgatggaagtggtccgatcaaactatgaggca
atgattgaccgtgctcatggaggtcccaatttcatgatgcattcaggaatttcccaagcc
tctgagtatgatgatccgccaggtctgagggagaaggcagaatacctgctgagggagtgg
gtgaacctctaccattcagctgcagcgggccgtgacagtaccaaagcattctctgcgttt
gttggacaggtagagcttttggaaagaaagatgcaccagcaaggcatcctgaaaacagat
gacctgatcacccgctttttccgtctttgcaccgaaatgtgtgttgaaatcagctatcgt
gctcaggctgagcaacagcataatcctgctgccaaccccactatgattcgagccaagtgc
taccacaatctggatgcctttgtgcgacttattgcactgctagtgaagcactctggggag
gcaacgaacacggttacaaagatcaacctcctgaataaggttcttggtattgtggtggga
gttcttctgcaagaccatgatgttcggcagagtgagtttcagcagcttccttaccatcgg
attttcatcatgttactgttggaattaaatgctcctgagcatgtgctggagaccatcaac
ttccagacgctcacagctttctgtaacacatttcacatcctgaggcctacaaaagctcca
ggttttgtttatgcctggctggaactgatctcccatcggatatttattgcaagaatgctg
gcacatacaccacagcagaagggttggcctatgtatgcccagttattgatcgatcttttc
aagtacttggctcctttccttagaaatgtggaactcaccaaacctatgcaaattctttac
aagggcactctgcgtgtgttgctggtcttgttgcatgatttcccagaatttctttgtgac
taccactacgggttttgtgatgtgatcccacctaactgtattcagctaaggaatctgatc
ctgagtgccttcccacggaacatgaggcttccagaccctttcacccccaatctaaaggtg
gacatgttaagtgagattaatattgctccacgaatactcacgaattttactggagtgatg
ccacctcaattcaagaaagacttggattcctatctcaaaacccgttctccggtcactttt
ttgtctgacttgcgcagcaacctacaagtatcaaatgaacctggcaaccgctacaacatc
cagctgattaatgcactggtgctctacgtaggtactcaagctattgcgcacattcacaac
aaaggcagcacaccctctatgagcaccattacccactcagctcacatggacatcttccag
aatttggcagtagacctggacactgaaggccggtaccttttcttgaacgcaattgccaac
cagctgcgatatcccaacagtcacacccactacttcagttgcaccatgctgtacctgttt
gcggaggccaacactgaggctatccaggagcagatcactagggttctcttggaacgactg
attgtaaataggcctcatccctggggtctccttattactttcatcgagctgataaaaaat
ccagcgtttaagttctggaaccatgagtttgttcactgcgctccagaaatcgagaagttg
ttccagtcagttgcacagtgctgcatggggcagaagcaggcccagcaagtaatggaaggg
actggtgccagttag
DBGET
integrated database retrieval system
