Gluconacetobacter diazotrophicus PA1 5 (JGI): Gdia_2961
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Entry
Gdia_2961 CDS
T00798
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gdj
Gluconacetobacter diazotrophicus PA1 5 (JGI)
Pathway
gdj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gdj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Gdia_2961
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gdj03021
]
Gdia_2961
03400 DNA repair and recombination proteins [BR:
gdj03400
]
Gdia_2961
Enzymes [BR:
gdj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Gdia_2961
Transcription machinery [BR:
gdj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Gdia_2961
DNA repair and recombination proteins [BR:
gdj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Gdia_2961
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl_2
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ACI52691
UniProt:
A9H3S0
LinkDB
All DBs
Position
3245222..3249409
Genome browser
AA seq
1395 aa
AA seq
DB search
MNELMKILGQTGQAMTFDQIKIQLASSEQIRSWSYGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKFRGIICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMVDMTLKDLEKILYFESYVVLEPGTSPLKQFSLLTEDQYLDVMDEHGDDGIEVG
IGAEAIKKVLERIDCKADKERLRQELKDTTSEAKRKKLVKRLKLIEAFADSESRPEWMIM
DLIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QESVDALFDNGRRGRAITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFIYSKLEKYGHATTIKAAKRMVEKERPEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDIVLGLYYLSLETPEFLATPDRNEYDAEGRLTVTG
ASSFATIGEVEYALSAGAIKLHDKIVARFDTVDAEGKPVRQTVITTPGRMLIAQILPRHP
AIPFSLINKQLTKKNVSDVIDAVYRHCGQKECVIFCDRMMGLGFRHAAKAGISFGKDDMI
IPAEKKVLVERTAAEVKEFEQQYQDGLITAGERYNKVVDAWSRCTDEVQAAMMKEISRQE
VGKVTNSVWMMSHSGARGSPAQMKQLAGMRGLMAKPSGEIIEQPIIANFKEGLSVLDYFT
STHGARKGLADTALKTANSGYLTRRLVDVAQDCIIVEDDCGSERGLTVRAVMDGGEIVSS
LSERILGRTVAADILDPATGEVLFKRDTLIEEAQAEKIEKAGVESVLIRSVLTCESRVGV
CGLCYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSMVEASR
DGHVTINNRTIVHNSQNVPIVMSRNCEIVLTDDKGVERARYRVPYGARLLVEEGAAVTRN
QKLAEWDPYTLPIITEHSGTVEYLDLIDSITLVERMDEVTGLTSKVVVDYKQAAKGVDLR
PRLQLKDANGHVIKLSNGNDARYFLSPDSLLSVENGAQVSAGDVLARIPREGSKTRDITG
GLPRVAELFEARRPKDHAIISETDGRVEFGKDYKAKRRIIVKNDETGEETDYLIPKGKHV
SVQEGDFVRVGDPLVDGPRVPHDILKVLGVEALSDYLVNEIQDVYRLQGVKINDKHIEVI
VRQMLQKVEILEPGDTTYLIGETVDRIEFETENTKRLNMGERPAQAMPVLQGITKASLQT
QSFISAASFQETTRVLTEAATAGKKDTLNGLKENVIVGRLIPAGTGSVMNKLRAIAAGQD
RQRLAQARPVVSKAD
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaactcatgaagatcctgggccagaccggccaggccatgactttcgaccagatc
aagatccagctcgcatcgtccgagcagatccggtcctggtcgtatggcgagatcaagaag
cccgagaccatcaactaccgcacgttcaagccggaacgcgacggcctgttctgtgcgcgc
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagttc
cgcggcatcatctgcgagaagtgcggcgtcgaggtcacgctggccaaggtccggcgcgag
cgcatgggccatatcgaactggccagcccggtcgcgcatatctggttcctgaagtcgctg
cccagccgcatcggcctgatggtcgacatgacgctgaaggatctggaaaagatcctgtat
ttcgaaagctacgtggtgctggaaccgggcacctcgccgctgaagcagttcagcctgctg
accgaagaccagtacctggacgtcatggacgaacatggtgatgacgggatcgaggtcgga
atcggcgccgaggcgatcaagaaggtgctggaacgcatcgactgcaaggcggacaaggag
cgcctgcgccaggagctgaaggacaccacatccgaagccaagcgcaagaagctggtcaag
cgcctgaagctgatcgaggcgttcgcggacagcgaatcgcgccccgagtggatgatcatg
gacctgattccggtcatcccgccggaactgcgcccgctggtcccgctggatggcggccgt
ttcgcgacgtccgacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctg
aagcggctgatcgagctgcgcgcgcccgacatcatcgtgcgcaacgaaaagcgcatgctg
caggaatcggtcgatgcgctgttcgataacggccgtcgcggccgcgcgatcacgggcgcc
aacaagcgcccgctgaagtcgctgtctgacatgctgaagggcaagcagggccgcttccgc
cagaacctgctgggcaagcgcgtcgattactccggccgttcggtcatcgtggtcggcccg
gaactgaagctgcatcagtgcggcctgcccaagaagatggcgctggagctgttcaagccg
ttcatctactcgaagctggaaaagtacggtcacgccaccaccatcaaggccgcgaagcgg
atggtggaaaaggaacgtcccgaggtatgggacatcctggaagaggtgatccgcgaacat
ccggtcatgctgaaccgcgcgccgacgctgcatcgcctgggcatccaggcgttcgagccg
gtgctgatcgaaggcaaggcgatccagctccacccgctggtctgcaccgccttcaacgcg
gatttcgacggcgaccagatggccgtgcacgtgccgctgagcctcgaggcgcagctggaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctcagccccgcgaacggcaagccgatc
atcgtgccgtcgcaggacatcgtgctgggcctgtactatctcagcctggaaacgccggaa
ttcctggccacgcccgaccgcaacgagtacgacgccgaaggtcgcctgacggtcacgggt
gcctcgtccttcgccacgatcggcgaggtcgagtacgccctgtcggccggcgcgatcaag
ctgcatgacaagatcgtcgcgcgcttcgacacggtcgatgccgagggcaagccggtgcgc
cagaccgtcatcacgacgccgggccgcatgctgatcgcgcagatcctgccccgccatccg
gcgattcccttctcgctgatcaacaagcagctgacgaagaagaacgtgtcggacgtcatc
gacgcggtctatcgccattgcggccagaaggaatgcgtcatcttctgcgaccggatgatg
ggcctgggcttccgtcacgcggcgaaggccggcatctcgttcggcaaggatgacatgatc
atcccggccgaaaagaaggtgctggtcgaacgcaccgccgccgaggtgaaggagttcgag
cagcagtaccaggacggcctgatcacggcgggcgaacgctacaacaaggtggtcgatgcc
tggtcgcgctgcacggacgaagtgcaggccgcgatgatgaaggagatctcgcgccaggag
gtcggcaaggtcacgaactcggtgtggatgatgagccactccggcgcgcgtgggtcgccg
gcccagatgaagcagcttgccggcatgcgcggcctgatggccaagccgtcgggcgagatc
atcgagcagccgatcatcgccaacttcaaggaaggcctgtcggttctcgactacttcacc
tccacccacggcgcccgcaagggcctggcggacacggcgctgaagaccgcgaactcgggc
tacctgacgcgccgtctggtcgacgtggcgcaggactgcatcatcgtcgaggacgattgc
gggtccgagcgcggtctgacggtccgcgccgtcatggatggcggcgagatcgtctcgtcc
ctgtccgagcggatcctgggccgcacggtcgcggccgatatcctggaccccgcgacgggc
gaggtgctgttcaagcgcgataccctgatcgaggaggcccaggccgagaagatcgagaag
gcgggcgtggaaagcgtcctgatccgctcggtcctgacctgcgaaagccgggtcggcgtc
tgcggcctgtgctacggccgcgacctggcgcgcggcacgccggtcaatatcggcgaggcc
gtgggcgtgatcgcggcgcagtcgatcggcgagccgggcacccagctgaccatgcgtacc
ttccatatcggcggcgcggcccagcgtggtgccgagcagtcgatggtcgaggcgtcgcgt
gacggccatgtgacgatcaacaaccgcaccatcgtccataacagccagaacgttccgatc
gtgatgtcgcgtaactgcgaaatcgtgctgacggacgacaagggggtcgagcgcgcccgc
taccgcgtgccgtacggcgcccgcctgctggtggaggaaggggccgccgtcacgcgtaac
cagaagctggccgagtgggacccgtacaccctgccgatcatcaccgagcattcgggaacg
gtcgagtatctggacctgatcgactccatcacgctggtcgagcggatggacgaagtgacg
ggcctgacctcgaaggtcgtggtggactacaagcaggcggccaagggggtggacctgcgt
ccgcgcctgcagctcaaggacgcgaacggccacgtcatcaagctgtcgaacggcaatgac
gcgcgctacttcctgtcgcccgactcgctgctgtcggtcgaaaacggggcgcaggtcagc
gcgggcgacgtgctggcccgcatcccgcgcgaaggctcgaagacccgtgacatcacgggt
ggtctgccccgcgtcgcggaactgttcgaggcccggcgtccgaaggatcacgcgatcatt
tcggaaaccgacggtcgcgtcgagttcggcaaggactacaaggccaagcgccgcatcatc
gtgaagaacgacgagacgggcgaggagaccgactacctgatcccgaagggcaagcacgtg
tcggtccaggaaggcgacttcgtccgcgtgggcgatccgctggtcgacggtccgcgcgtg
ccgcacgacatcctgaaggtcctgggcgtcgaggccctgtcggactacctggtgaacgaa
atccaggacgtctatcgactgcagggcgtgaagatcaacgacaagcatatcgaggtgatc
gtccgccagatgctccagaaggtggaaatcctggagcccggcgacacgacctacctgatc
ggcgagacggtggatcggatcgagttcgagaccgagaacacgaagcgcctgaacatgggc
gaacggcccgcccaggcgatgcccgtgctccagggcatcaccaaggcgtcgctgcagacc
cagtccttcatctcggcggcctcgttccaggaaacgacgcgcgtcctgaccgaagccgcg
acggcgggcaagaaggacacgctgaacggcctgaaggagaacgtgatcgtcggtcgcctg
atcccggccggcacgggcagtgtgatgaacaagctgcgcgccatcgccgccggccaggac
cgccagcgcctggcgcaggcccgtccggtggtcagcaaggcggactga
DBGET
integrated database retrieval system
