Geobacillus sp. 12AMOR1: GARCT_00125
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Entry
GARCT_00125 CDS
T03966
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
gea
Geobacillus sp. 12AMOR1
Pathway
gea03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gea00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GARCT_00125 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gea03021
]
GARCT_00125 (rpoB)
03400 DNA repair and recombination proteins [BR:
gea03400
]
GARCT_00125 (rpoB)
Enzymes [BR:
gea01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GARCT_00125 (rpoB)
Transcription machinery [BR:
gea03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GARCT_00125 (rpoB)
DNA repair and recombination proteins [BR:
gea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GARCT_00125 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AKM17484
LinkDB
All DBs
Position
116459..120031
Genome browser
AA seq
1190 aa
AA seq
DB search
MTGRLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFLDEGLREMFKEISPIEDFSG
NLSLEFIDYSLGEPKYSVEEAKERDVTYAAPLRVKVRLINKETGEVKEQDVFMGDFPLMT
ETGTFIINGAERVIVSQLVRSPSVYYSDKVDKNGKRGYSATVIPNRGAWLEYETDAKDVV
YVRIDRTRKLPVTVLLRALGFSSDQEIIDLLGDNEYLRNTLEKDNTDSTEKALIEIYERL
RPGEPPTLENAKSLLASRFFDPKRYDLASVGRYKINKKLHIKNRLFNQRLAETIVDPETG
EVIAEAGAMIDRRTLNRLLPYLEKGVGLRTYRPAEGVADGPIEVQTVKIYAPNDPDNEKV
INIIGNGFIAEDVKHITPADIIASISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQF
RIGLSRMERVVRERMSIQDTNTITPQQLINIRPVIAAIKEFFGSSQLSQFMDQTNPLAEL
THKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSTYAKVNKF
GFIETPYRRVDPETGKVTDQIDYLTADEEDNYVVAQANVPLAEDGTFLEENVIARFRGEN
IVVKRDRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLLEPEAPIVGT
GMEYVSAKDSGAAVICKHRGIVERVEAKEIWVRRLIEVDGKEVKGDLDKYRLLKFVRSNQ
GTCYNQRPIVKKGDIVEKGEILADGPSMDKGELALGRNVLVAFMTWDGYNYEDAIIMSER
LVKEDVYTSIHIEEYEAESRDTKLGPEEITRDIPNVGEDALKNLDERGIVRIGAEVKDGD
LLVGKVTPKGMTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKVFNREDGDE
LPPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISRILPEEDMPFLPDGTPIDIMLNPL
GVPSRMNIGQVFELHLGMAAKKLGLHIASPVFDGATEEDVWNILEEAGMARDAKTVLYDG
RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGVPESFKVLIKELQSLGM
DVTILTSDEQEINMENFDDDDDHAPDAIMVDVKPAEPEEASEEKDAVTKE
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
ttgacaggccgactagttcaatacgggcgacaccgccaacggagaagttacgcacgcatt
agcgaagtgctggaactgccgaacttgattgaaatccaaacgtcctcctatcaatggttt
ctcgatgaagggctgcgggaaatgttcaaggaaatttccccgattgaagacttttctggc
aatctctcgcttgaatttatcgactacagcttaggggaaccgaaatattcggtggaagag
gcgaaagaacgcgatgttacatatgcggcgccgcttcgtgtgaaagtacgcctgatcaat
aaagaaacgggtgaagtgaaagagcaggatgtgtttatgggcgattttccgctcatgacg
gaaacaggaacgttcatcatcaacggggcggaacgcgtgattgtctcccagctcgttcgc
tcgccaagtgtgtattacagcgataaagtcgataaaaacgggaagcgcggctattcggca
accgtgattccgaaccgcggcgcatggcttgaatatgaaacggacgcgaaagatgtcgtt
tacgtccgcatcgaccgcacccgcaagctgccggtgacggtgcttcttcgtgcgctcgga
ttcagctccgatcaagaaatcatcgacctgctcggcgataacgaatatttgcgcaatacg
ctcgaaaaagataataccgacagcacggaaaaggcattgattgaaatatatgagcgcctc
cgtccgggcgagccgccgacgcttgagaacgcgaaaagcttgcttgcgtcccgctttttt
gacccgaaacgctacgatttggccagcgtcgggcgctataaaatcaacaaaaagcttcat
attaaaaaccgcttgttcaaccagcggctggcggaaacgatcgtcgatccggaaacggga
gaagtcatcgctgaagctggagcgatgatcgaccgccggacgctgaaccgcctgctgccg
tatttggaaaaaggagtcgggctgcggacgtaccgtccggctgagggagtggcggatggt
ccgattgaggtgcagaccgtgaaaatttatgcaccgaatgatccggacaacgaaaaggta
atcaacatcatcggcaacggctttattgcggaagatgtcaaacatattacgccggcggac
atcattgcatcgatcagctatttcttcaacttgctccacggcgtcggcgatacggatgac
atcgaccatttgggcaaccgccgtctccgttcggtcggcgaactgctgcaaaaccaattc
cgcatcggcttgtcgcgcatggaacgcgtcgtgcgcgagcgcatgtcgattcaagatacg
aacacgatcacgccgcagcagctgatcaacatccgcccggtgatcgcagcgattaaagag
tttttcggcagctcgcagctgtcgcagtttatggatcagacgaacccgctcgctgagctg
acgcataagcgccgcctttccgcgcttggccccggcggattgacgcgcgagcgcgccggg
tttgaagtgcgcgacgttcactattcgcactatgggcggatgtgtccgatcgagacgccg
gaaggcccgaacatcgggttgatcaactcgctgtccacgtacgcgaaagtgaacaaattc
ggctttatcgaaacgccgtaccggcgcgttgatccggagacaggaaaagtaaccgaccaa
attgactatttgacggccgatgaagaagacaattacgttgtggcgcaggcgaacgtgccg
cttgcggaagacgggacgttccttgaggaaaacgtcatcgcccgtttccgcggcgagaac
atcgtcgtcaagcgcgaccgcgtcgactatatggacgtgtcgccgaagcaagtggtctcg
gcggcgacggcgtgcatcccgtttttggaaaatgacgactcgaaccgcgccttgatgggg
gcgaacatgcagcggcaagcggtgccgctcttggagccggaagcgccgatcgtcggcacg
ggcatggagtatgtttcggcgaaagactcaggggcggcagttatttgcaagcatcgcggc
attgtggaacgcgtagaagcaaaagaaatttgggtgcgccggctcattgaagtcgacggc
aaagaagtcaagggtgatctagataaatatcggttgctgaaattcgtccggtcgaaccaa
ggtacgtgctacaaccagcggccgatcgtgaaaaaaggcgatattgttgaaaagggtgaa
attttggccgatggcccgtcgatggacaaaggtgaactcgcgcttggccgcaacgtgctt
gttgcctttatgacatgggacggctacaactacgaagatgcgatcatcatgagcgaacgg
ctcgtcaaagaagacgtgtatacgtcaatccatattgaagagtatgaagccgaatcgcgc
gacacgaagctcggtccggaagaaattacacgcgacatcccgaacgtcggtgaagatgcg
ttgaaaaacttggatgagcgcggcatcgtccgcatcggcgcagaagtgaaagacggcgat
ttgctcgtcggcaaagtgacgccgaaaggaatgaccgagctgacggctgaggagcggctg
ttgcatgcgatcttcggcgaaaaagcgcgcgaggtgcgcgatacgtcgctgcgcgtcccg
cacggcggcggcggcattgtccttgacgtcaaagtgttcaaccgcgaagacggcgacgaa
ctcccgccgggcgtcaaccagctggtgcgcgtctatatcgtgcaaaagcggaaaatttcc
gaaggcgataaaatggcaggccgccacggaaacaaaggggttatctcccgcattcttccg
gaagaagatatgccgttcttgccggatggcacgccgattgacatcatgttgaacccgctc
ggcgttccgtcgcggatgaacatcgggcaagtgtttgagctgcatcttggcatggcggcg
aaaaaacttggcttgcatatcgcttccccagtctttgacggagcgacggaggaagatgtt
tggaacattcttgaagaagccggcatggcgcgcgatgccaaaacggtgctgtatgacggg
cggacgggcgaaccgtttgacaaccgcgtgtcggtcgggatcatgtacatgatcaagctt
gcccacatggtcgacgacaaactccacgctcgctcgaccggcccgtactcgcttgtcacc
cagcagccgctcggcggcaaggcgcagttcggcggccagcgctttggcgagatggaagta
tgggcgcttgaagcgtacggtgcggcgtatacgctgcaggaaattttgaccgtcaagtct
gacgatgtggttggccgcgtcaaaacgtacgaagcgatcgtcaaaggggaaaacattccg
gaaccgggcgtgccggagtcgtttaaagtgttgatcaaagagctgcaaagtctagggatg
gacgtcacgattttgacgagcgacgaacaggaaatcaacatggaaaactttgacgacgat
gatgatcatgcgccggatgcgatcatggtcgatgtgaaaccggctgaaccggaagaagcc
agcgaagaaaaagatgcggtaacgaaagagtaa
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