Granulicatella elegans: LK443_05250
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Entry
LK443_05250 CDS
T09296
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
geg
Granulicatella elegans
Pathway
geg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
geg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LK443_05250 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
geg03021
]
LK443_05250 (rpoB)
03400 DNA repair and recombination proteins [BR:
geg03400
]
LK443_05250 (rpoB)
Enzymes [BR:
geg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LK443_05250 (rpoB)
Transcription machinery [BR:
geg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LK443_05250 (rpoB)
DNA repair and recombination proteins [BR:
geg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LK443_05250 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Halo_prof
Motif
Other DBs
NCBI-ProteinID:
UEA30709
LinkDB
All DBs
Position
1042255..1045905
Genome browser
AA seq
1216 aa
AA seq
DB search
MEELAHHDVKYGKHRVRRSYARISEVLELPNLIEIQTDSYQWFLDEGIREMFKDISPIED
HTGNLSLEFLDYELHAPKYNLAEARNHDANYAAPIYVKMRLVNKETGEVKDQEVFFGDFP
LMTEMGTFIINGAERVIVSQLVRSPGSYFHDRPDKNGKALYGATLIPNRGAWLEYESDSK
DISYVRIDRTRKIPLTVLIRALGFESDDTILEIFGESETLRLTLDKDVHKRMDESRTEEA
LKDIYDRLRPGELKTAESSRNLLTARFFDPRRYDFAAVGRYKVNKKLNLKTRLLNQTVAE
NIVHPETGEIVVEAGTVLEKEIMEKVAQALEAGANLFTLYPSSEGVIQEPVTIQSVQVYS
PQDPERIIKVIGNANIPDEIKCVTAADVLATISYFLNLYEGLGSTDDIDHLGNRRIRSVG
ELLQNQFRIGLSRMERVVRERMSIQDVATVTPQQLVNIRPVVASIKEFFGSSQLSQFMDQ
TNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLST
YAKINKYGFIETPYRRVDWKTHKVTDKIDYLTADEEDRYVVAQANSPLNEDGSFVNDVVM
ARYVSENLEVPVERVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLLNP
KAPFIGTGMEYVTAHDSGVALLCKREGIVEFVDANQVRVRTADGSLDQYNITKFHGSNAG
MCYNQRPIVSKGDKVEVGEILADGPSMEQGELALGQNVLVAFMTWEGYNYEDAVIMSERL
VKDDVYTSIHIDDYDSEARDTKLGPEEITREIPNVGEDALKNLDESGIIRIGAEVKDGDI
LVGKVTPKGLTEQSPEERLLHAIFGEKAREVRDTSLRVPHGGGGIVRDVRVFTRAAGDEL
APGVNKLVRVYIVQKRKINEGDKMAGRHGNKGVVSRIMPEEDMPFLPDGTPVDIMLNPLG
VPSRMNIGQVLELHLGMAARELGIYIATPVFDGAQDEDVWGTVAESGMARDAKTILYDGR
TGEPFDNRVSVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVW
ALEAYGAAYTLQEILTYKSDDVVGRVKTYESIVKGQQISRPGVPESFRVLVKELQALGLD
MKVLDENDEEIKLEDMDDDARMNFNDVEKMSEKTRKLNEYSDRIAELSGEKTETVEPAVE
ETEEIEASEDTEETLD
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
gtggaagagttggcacatcatgatgtgaaatacggtaaacaccgtgtgcgtagaagttat
gcacgaatcagtgaagtattagaattaccaaatctaattgaaattcaaactgattcttac
caatggttcttagatgaagggattcgtgaaatgtttaaagacatctcaccaatcgaagac
catacaggtaatttatcattagaattcttagattatgaattacatgctccaaaatataac
cttgcagaagcaagaaatcacgacgcaaattatgcagcaccaatttatgtaaaaatgcgt
ttagtgaataaagaaactggagaagtaaaagaccaagaagtcttctttggagatttccca
ttaatgacagaaatgggaacatttatcattaatggtgcagaacgtgttattgtatctcaa
ttagtacgttcaccaggttcatacttccatgaccgcccagataaaaatggtaaagcatta
tatggtgcaactttaattcctaaccgtggtgcatggttagaatatgaatcagattcaaaa
gacatttcatatgtacgtattgaccgtactcgtaaaattccattaacagtacttattcgt
gcattaggttttgaatcagatgacacaattttagaaatcttcggtgaaagtgaaacatta
cgtttaacgttagataaagatgttcataaacgtatggatgaatcacgtacagaagaagca
ttaaaagatatttatgaccgtctacgtccaggtgaactaaagacggctgaaagttcacgt
aacttattaacagctcgtttctttgatccacgtcgttatgattttgcggcagtaggtcgt
tataaagtaaataaaaaattaaacttaaaaacacgtttattaaatcaaacagtcgctgaa
aatatcgtacatcctgaaactggagaaatcgttgttgaagcaggaacagttcttgaaaaa
gaaattatggaaaaagtagctcaagcattagaagcaggagcaaacttatttacattatat
ccttcaagtgaaggggttatccaagaacctgtaacaattcaatccgttcaagtgtattca
ccacaagatcctgaacgtatcattaaagtaatcggaaatgcgaatattccagatgaaatt
aaatgtgtaacagcagctgacgttttagctacaatcagctacttcttaaacttatatgaa
ggactaggctcaacagatgatattgaccacttaggaaaccgtcgtattcgttcagtaggt
gaattattacaaaaccaattccgtatcggtttgtctcgtatggaacgtgtggttcgtgaa
cgtatgtctattcaagacgtagcgacagtaacgccacaacaattagtaaatattcgtcct
gtagtagcatcgattaaagaattctttggttcatctcaattatcacaattcatggaccaa
acaaacccattaggagaattaacacacaaacgtcgtctatcagccttaggacctggtggt
ttgactcgtgaccgtgctggatatgaagttcgtgacgtacactattctcactatggtcgt
atgtgtccgatcgaaactcctgaaggaccaaacatcgggttaatcaacagcttatcaaca
tacgctaaaattaataaatatggatttattgaaactccataccgtcgtgtagactggaaa
actcataaagtaacagataagattgactacttaacagcagacgaagaagaccgttatgta
gtagcgcaagcaaactctccattaaatgaagatggaagcttcgtaaacgatgtagtaatg
gctcgttacgtatcagaaaacttagaagttcctgtagaacgtgtagactatatggacgta
tctccaaaacaagtagttgccgttgcgacagcatgtattccgttcttagaaaacgacgac
tcaaaccgtgcgttaatgggtgctaacatgcagcgtcaagcagttccattattaaatcca
aaagcaccatttattggtactggtatggaatatgtaacagcacatgactctggggtagct
ttattatgtaaacgtgaaggtatcgtagaatttgtagatgcaaatcaagtccgtgttcgt
acagcagatggttcattagaccaatataatattactaaattccatggttcgaatgctggt
atgtgttataaccaacgtccaattgtttcaaaaggagacaaggtagaagttggtgaaatt
ttagcagatggtccttcaatggaacaaggtgaattagcattaggacaaaacgttctagtt
gcattcatgacttgggaagggtacaactatgaggatgcggttatcatgagcgaacgtctt
gtaaaagacgatgtgtatacttcaattcatattgatgactatgattcagaagctcgtgat
acaaaattaggaccagaagaaattacccgtgaaattccaaatgttggggaagatgcattg
aagaatcttgacgaaagcggaattatccgtatcggtgcggaagtaaaagatggggatatc
ttagttggtaaagtaactcctaaaggattaacagaacaatcaccagaagaacgtttatta
catgctatcttcggtgaaaaagctcgtgaagtacgtgatacttcattacgtgttcctcac
ggaggaggcggtatcgttcgtgatgtacgtgtattcacacgtgcagcaggcgatgaatta
gcgccaggagtaaacaaattagttcgtgtatacattgttcaaaaacgtaaaattaatgaa
ggggataagatggccggacgtcacggtaataaaggggtagtttctcgtattatgccggaa
gaagatatgccattcttaccagatggaacaccagttgacatcatgttaaacccgttaggg
gtaccatcacgtatgaacattggacaagtattagagttacacttaggaatggcagctcgt
gaattaggtatctacattgcaacaccagtatttgatggtgcgcaagatgaagatgtttgg
ggaacagttgcagaatcaggtatggctcgtgatgcgaaaacaattttatatgatggacgt
acaggggaaccatttgataaccgtgtatctgtaggggtaatgtacatgattaaacttgcc
cacatggttgatgacaaacttcatgctcgttcaattggaccatactcattagtaacgcaa
caacctcttggaggtaaagctcaatttggtggacaacgtttcggagaaatggaggtatgg
gcgctagaagcatatggtgctgcatacacattacaagaaatcttgacatacaaatcagat
gacgttgttggtcgtgtgaaaacttacgaatcaatcgtgaaaggtcaacaaatttctaga
ccaggagtacctgaatcattccgtgtattagtaaaagaattacaagctttaggtcttgat
atgaaagtgttagacgaaaatgatgaagaaattaagttagaagacatggacgatgatgct
cgtatgaatttcaatgatgttgaaaaaatgagcgaaaaaacacgtaagttaaatgaatat
tctgaccgtattgctgaactttctggagaaaaaacagaaacagttgaaccagcagtagaa
gaaactgaagaaattgaagcttcagaagatacagaagaaactttagactaa
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