Gelria sp. Kuro-4: kuro4_10420
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Entry
kuro4_10420 CDS
T07432
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
gek
Gelria sp. Kuro-4
Pathway
gek03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gek00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
kuro4_10420 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gek03021
]
kuro4_10420 (rpoB)
03400 DNA repair and recombination proteins [BR:
gek03400
]
kuro4_10420 (rpoB)
Enzymes [BR:
gek01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
kuro4_10420 (rpoB)
Transcription machinery [BR:
gek03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
kuro4_10420 (rpoB)
DNA repair and recombination proteins [BR:
gek03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
kuro4_10420 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
BCV24269
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All DBs
Position
1053503..1056898
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AA seq
1131 aa
AA seq
DB search
MLHPVRGHAGARHSFAKLVDVLELPNLIEVQRSSYQWFLDEGLRETFQEVSPIQDFTGNL
ILEFVDYSLGEPKYSVDECKERDVTYAAPLRIRVRLHNKETGEVKEQEVFMGDFPLMTDK
GTFIINGAERVVVSQLVRSPGAYFARTTEQGKELFGATLMPNRGAWLEFETDAGDLIGVR
VDRTRKIPVTVLLRALGYSTDGRILELFDDDARIRATLERDNTKSEEEALVEIYKRLRPG
EPPTVDSARTLLESLFFDPKRYDLAAVGRYKLNKKLKLNIPQDVRILTREDIVATIRYLL
ALKDGKGKTDDIDHLGNRRLRSVGELLQNQFRIGLARMERVVRERMTIQDVDIITPQALI
NIRPVVASVKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFEVRDVHYS
HYGRMCPIETPEGPNIGLIGSLSTYARINQYGFIETPYRKVDKERGVVTDEVVYLTADEE
DEYVIAQANEPLTPDGRFANSKVTVRDGELIIEVPSDRVDLMDVSPKQLVSVATALIPFL
EHDDANRALMGSNMQRQAVPLLVPESPYVGTGMEDKTAYDSGVLVTARRAGVVVRVTADE
VVVRAEDGTLDRYRLQKFLRSNQGTCINQRPIVFKGERVEAGTVLADGPATAQGELALGR
NVLCAFMPWEGYNYEDAILISERLVKDDVFTSIHIEEYECDARDTKLGPEEITRDIPNVG
EEALKDLDEHGIIRTGAEVRPGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSL
RVPHGEAGIVVDVKIFSRENGDELAPGINQLVRVYIAQKRKISEGDKMAGRHGNKGVIAR
ILPEEDMPFLPDGTPVQIILNPLGVPSRMNIGQVLETHLGWAANTLGFKVATPVFDGARE
EEIIGFLKKAGLPEDGKLELRDGRTGEPFENRITVGYVYMLKLAHLVDDKIHARSTGPYS
LVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQELLTVKSDDVVGRVKTYEAVVKGD
NVPEPGVPESFKVLIKELQSLALDVKVLNENEQEIEIKDDDDDVTVTAKELDLDIAGEVE
EPRGKGRRELPEPPEPEEEPVEDEGEEEEPQDEDVLALEEDLVGDPEEDEE
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
ttgctgcatccggtccggggtcacgccggcgcgcgccacagtttcgccaaactggtggac
gtgctggaactgccgaacctcatcgaggtccagcgcagctcgtaccagtggttcctcgat
gagggcctccgggagacgttccaggaggtttcgcccatccaggacttcaccggcaatctc
attttggagtttgtggattacagcctgggtgagcccaagtactcggtggacgagtgcaag
gagcgcgacgtaacctacgcggctccgctgcgcatccgtgtacgcctgcacaacaaggaa
acgggcgaggtgaaggagcaggaggtgttcatgggggactttcccctcatgacggacaag
ggcacctttatcatcaacggggccgagcgcgtggtggtgagccagctggtgcgctcgccg
ggcgcctacttcgcccgcaccacagagcaggggaaggaacttttcggcgccacccttatg
ccgaaccgcggtgcctggctggagtttgagacggacgccggcgacctcatcggggtgcgg
gtggaccgcacgcgcaagattcccgtcacggttcttctgcgtgcgctgggttacagcacc
gacgggcgcatcctggaacttttcgacgacgatgcccgtatccgggccacgctggagcgc
gacaacaccaagtccgaagaggaagccctggtggagatctacaagcgcctgcgtccgggt
gagccgcccacggtggacagcgcgcggacgctcctcgagagcctgttcttcgatcccaag
cgttacgacctggccgccgtcggccgttacaagctcaataaaaagcttaaactaaacatc
ccgcaggatgtccggattctcacccgggaggatattgtggccaccatccgttacctcctg
gccctgaaagacggcaaggggaagacggatgacatcgaccacctgggcaaccgccgcctg
cgctcggtgggtgagctgctgcagaaccagttccgcatcgggctcgcccgcatggagcgt
gtggtgcgcgagcgtatgaccattcaggacgtggacatcattaccccgcaggcgctcatc
aacatccgcccggtggtggcttccgtcaaggaattcttcgggagctcgcagctttcccag
ttcatggaccagaccaaccccctggcggagctcacccacaaaaggcgcctttcggccctg
gggccgggcggcctttcgcgcgagcgcgccggtttcgaggtgcgcgatgtccactattcc
cactacgggcgcatgtgccccattgagacgccggaaggtccgaacatcggcctgatcggt
tccctttccacctacgcccgcatcaaccagtacggcttcattgaaacgccgtaccgcaag
gtggataaagaacgcggcgtggtgacggacgaggtcgtctacctgaccgccgacgaagag
gacgagtatgtcatcgcccaggccaacgagcccctcacgccggacggccgcttcgccaac
agcaaggtaaccgtacgcgacggcgagctcatcattgaggtgccgtccgaccgggtggac
ctgatggacgtgtccccgaagcagctcgtttccgtggccacggccctcatccccttcctg
gagcacgacgacgccaaccgcgccctcatgggctccaacatgcagcgccaggcggtgccg
ctcttggtgccggagtccccgtacgtaggtacgggtatggaggacaaaacggcctacgat
tccggcgtgctggttacggcccgccgcgccggcgtggtggtccgcgtgacggcggacgag
gtggtggtgcgcgccgaggacgggacgctcgaccgctaccgcctgcagaagttcctgcgc
tcgaaccagggtacctgcatcaaccagcggcccattgtttttaagggcgagcgggtcgag
gcgggcactgttctcgccgatggcccggccacggcgcagggggagctcgccctggggcgc
aacgtgctctgcgccttcatgccctgggaaggttacaactacgaggacgccatccttatc
tccgagcggctggtgaaagacgacgtcttcacttcaattcatatcgaagagtacgagtgc
gatgcccgcgacaccaagctgggaccggaggagattacgcgcgacatccccaacgtgggc
gaggaagcgctgaaggacctggatgagcacggcatcatccgcaccggcgccgaggtacgc
ccgggcgacatcctggtgggtaaggtcacccccaagggcgaaacggagctcaccgccgag
gagcggctgctcagggccatcttcggcgagaaggcgcgcgaggtgcgcgacacctcgctg
cgcgtgccccacggcgaggccggcatcgtggtggacgtgaagatcttttcgcgggaaaac
ggcgacgagctggcgccggggatcaatcagctggtgcgcgtgtacatcgcccagaagcgc
aagatctccgagggcgacaagatggccggccgccacggcaacaagggcgtcatcgcccgc
atcttgccggaggaagacatgccgtttttgcccgacggcacaccggtgcagatcatcctg
aaccccctgggcgtgccctcgcgtatgaacatcggccaggtgctggagacgcacctgggc
tgggccgccaacaccctgggctttaaggtggccaccccggtgttcgacggcgcccgcgag
gaggagatcatcggattcctgaagaaggccggcctgccggaggacggcaagctcgaactg
agggacgggcgtaccggcgagccgttcgaaaaccgcatcaccgtgggctacgtctacatg
ctgaagctggcccacctggtggacgacaagatccacgcccgctccaccggcccctactct
ctggtcacccagcagcccctgggcggtaaggcgcagttcggcggacagcgcttcggcgag
atggaggtgtgggcgctggaggcctacggcgccgcctatacgctgcaagagcttcttacg
gtgaagtcggacgacgtggtgggccgcgtgaaaacctacgaagcggtggtgaagggcgac
aacgtcccggagccgggcgtgccggagtccttcaaggtgctcattaaggagctgcagagc
ctggccctggacgtgaaggtgctcaacgagaacgaacaggagattgagattaaggacgac
gacgacgatgtcacggtaacggccaaggagcttgacctggacatcgccggcgaggtggaa
gagccgcggggcaaagggcgacgcgagctgcccgagccgccggagccggaggaggagccg
gtggaggatgaaggcgaggaagaggaaccgcaggacgaagacgtgctggctctggaagaa
gacctggtgggcgaccccgaagaggacgaggaataa
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